Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq27445 150 1e-31 seq82395 127 2e-24 >seq27445 Length=3274 Score = 150 bits (166), Expect = 1e-31 Identities = 488/751 (65%), Gaps = 5/751 (1%) Strand=Plus/Plus Query 18607 GAAATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGT 18666 ||||| | |||||| | ||||| |||||| ||||||||||| || || | ||||||| Sbjct 2324 GAAATCAGTTTCCTTTGTTAACCACAAAGAAAGTTTTTTGGAGAGCTGTGGCGGAAGAGC 2383 Query 18667 TGTTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGA-TATACAC 18725 | || ||||| | || ||| || || ||||| | | | ||| | ||| | Sbjct 2384 TCTTGTGGTTCGTTAAAGGACAAACTGACTC-AAAGATCCTGAAGGAAAAAAATATTAAA 2442 Query 18726 ATATGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACAC 18785 || ||||| | || | | || | |||||| | | | || || | | ||| | Sbjct 2443 ATTTGGGAAGGAAACAGCACAAGAGAGTTTCTAGACAAGTGCGGATTAACTGATAGAGAA 2502 Query 18786 ACGGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAA 18845 || ||||| || || |||| || || |||||| | |||||||||| || || ||| Sbjct 2503 GAAGGTGACCTAGGTCCGGTTTATGGTTTTCAGTGGCGTTATTTTGGAGCTGAGTACAAA 2562 Query 18846 GACTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACA 18905 || || | ||| | |||||| | |||||||| ||| |||||| | || Sbjct 2563 ACATGCCATGATGATTATATGGGTCAAGGAGTGGATCAGCTTAAAAATGTTATTAACACT 2622 Query 18906 ATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATC 18965 || |||| || ||| |||| |||| || ||||| |||||||| |||||| Sbjct 2623 ATAAAAAATAATCCAACCGACCGAAGAATCTGCATGTCGTCCTGGAATCCTGTGGATATT 2682 Query 18966 CCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAA 19025 || ||||| |||| |||||||| || || || | || | | || Sbjct 2683 CCAAAAATGGCTTTACCGCCATGTCATTGCTTCGTCCAATTCTTTGTGGAGGATAACGAG 2742 Query 19026 TTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATT 19085 || || || | | || ||| | | |||||||| || ||||| || || ||||| ||| Sbjct 2743 TTGTCTTGTTCACTTTATCAGCGTGCTGGGGATATTGGTCTTGGAGTGCCATTCAATATT 2802 Query 19086 GCTGGATATGCACTTCTT-ACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGA 19144 || | ||||| ||| || || ||||| | || |||||| || | ||||| || || Sbjct 2803 GCCAGTTATGC-CTTATTGACATACATGATTGCTCATGTTTGTGGTTTGAAAACTGGCGA 2861 Query 19145 TTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGT 19204 || |||||| || || ||| | ||||| ||| || ||| | ||| ||||||| | Sbjct 2862 CTTTGTTCATAATATTGGAGATACTCATATCTACAAAAACCATCTGGATCCTTTAAAGGA 2921 Query 19205 GCAGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGA 19264 || | | || |||| ||| || ||| || | | | ||| | || || | | Sbjct 2922 ACAAGTTGGAAGAGTTCCAAGACCATTCCCTAGCTTGATATTTAACAGGAAAGTCGAAAA 2981 Query 19265 TATAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccT 19324 ||| | ||||| | || || |||||| ||| |||||||||||| | || || | Sbjct 2982 TATCGAAGACTTCACATTTGAAGATTTTAGTATTGTTGGATATAATCCTTATCCACCGAT 3041 Query 19325 AAAAATGGAAATGGCTCTTTAA-TGGATTTT 19354 || |||| |||||| ||||| | |||||| Sbjct 3042 CAAGCTGGAGATGGCTGTTTAATTTGATTTT 3072 >seq82395 Length=2084 Score = 127 bits (140), Expect = 2e-24 Identities = 371/569 (65%), Gaps = 2/569 (0%) Strand=Plus/Minus Query 18788 GGGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGA 18847 ||| ||||| || || | ||||| ||||| ||| | ||||| ||||| || |||||| Sbjct 1021 GGGTGACCTGGGACCGGTCTACGGATTCCAATGGCGTCATTTCGGAGCAGAGTATAAAAC 962 Query 18848 CTGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 |||||| ||||| | |||| | || || ||| | || || | | ||| Sbjct 961 CTGTCACGATGACTATACCAACAAAGGCGTAGACCAACTGAATGACGTCATTCAGAGAAT 902 Query 18908 TAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCC 18967 || | ||||| | |||| || ||| || | |||||||| ||| |||| Sbjct 901 CAAGAATAACCCTACGGACAGACGGATTTGTATGTCTGCCTGGAATCCCGTGGACCTCCC 842 Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGT-GAAT 19026 | ||||| | ||||| ||||| || |||||| |||||| ||| || ||| Sbjct 841 CAAAATGGCTTTGCCTCCTTGTCATTGTTTCGCTCAGTTCTACGTT-CAAGGGGACGAAC 783 Query 19027 TATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTG 19086 | || || | ||||||||||| | ||| | || ||||| || |||||||| |||| Sbjct 782 TCTCATGTTTGATGTACCAGAGATCTGCCGATGTTGGGCTTGGAGTTCCGTTCAATATTG 723 Query 19087 CTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATT 19146 | | |||||| | | |||||||| | || |||||| ||||| || || || | Sbjct 722 CCAGTTATGCATTGTTGACCTACATGATTGCCCATGTTTGCGGACTAAAGGTGGGCGACT 663 Query 19147 TAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGC 19206 | |||| | | || || | || ||||| ||||||| | || |||| |||| | Sbjct 662 TTGTTCACTCTTTCGGAGACACTCACGTTTACAAGAATCATGTGGAACCTTTGAAAGAAC 603 Query 19207 AGCTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATA 19266 |||| || |||| ||| || ||| || || | || || || | | | Sbjct 602 AGCTGAAGAGAGTTCCAAGACCATTCCCTAAACTGGTCATAAACCGTAAAGTTGAAAAAA 543 Query 19267 TAAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAA 19326 | | ||||| |||| || ||||| | || |||||| ||||| |||| || | | Sbjct 542 TCGAGGACTTCAAATTCGAAGATTTCACTATCGAAGGATATGATCCATACCCAACCATTA 483 Query 19327 AAATGGAAATGGCTCTTTAATGGATTTTT 19355 |||||||||||||| ||| || | ||||| Sbjct 482 AAATGGAAATGGCTGTTTGATTGTTTTTT 454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398913011111055