Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq93051 374 1e-98 seq116385 132 6e-26 >seq93051 Length=3786 Score = 374 bits (414), Expect = 1e-98 Identities = 680/982 (69%), Gaps = 20/982 (2%) Strand=Plus/Minus Query 53698 GTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 53757 ||||||||| || ||||| | ||| || || || | |||| | | | | ||||| || Sbjct 2244 GTTCAATGCTATGGATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAATATTCTAC 2185 Query 53758 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 53817 ||| || ||||||||||| || || || ||||| |||| |||||||||||||| || | Sbjct 2184 TATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCT 2125 Query 53818 GTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAAT 53877 ||||| ||||| ||||| | ||| |||| ||||||||||||| || || || || || Sbjct 2124 ATTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTCGATTAT 2065 Query 53878 CGCTTTCCAGACGACACGAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGTATA 53936 || ||| | |||| || ||| || | || | | || | || | |||||| Sbjct 2064 GGCAAACCACAATTGTTGAGCTTTAATTTTACGGTTAGCTTTTCCCTCCT-TCTCGTATT 2006 Query 53937 GT--GTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 53994 | ||| | | || |||||||| ||||||||||||| | | || ||||||| || Sbjct 2005 TTACGTAGAGATTC--TCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACATTTATG 1948 Query 53995 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 54054 ||||||||||| ||||| || | ||| | | || |||||||| || | ||| ||||| Sbjct 1947 GGGACACATCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATCGGGAAT 1888 Query 54055 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 54114 ||| | ||| |||||||||||| | || | || || || |||||||| || || | Sbjct 1887 CCATAAAGCATAAAATAGATCTCTTGCTCGGAGCTCATCTTTACCTGTATTTTTCTTCAA 1828 Query 54115 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGG 54174 || | || | | ||||||||||||||| || || || || || | | | |||| || Sbjct 1827 GTCTAAAAATTCAAAAATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAGCTCCGGG 1768 Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234 | ||| ||||| |||||||| | ||| | || |||||| | ||||| | ||| || Sbjct 1767 TCTTTTATTTCCACCCTGATCCACATATTTTGCAACGTTATTGAACACTCTAAGCATAGG 1708 Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATA-TAGCTTCCACTGGCACGAAT-- 54291 | | ||| || || | ||||| || || | ||| ||| | || | |||||||| Sbjct 1707 TACTAAACCGTTAGAAGTGCCATTAGTTCCTGCTATAGTAG-TGCCTTTAGCACGAATGC 1649 Query 54292 ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 54351 | | | ||| || ||| || || || || ||||| || | ||||||| ||| | Sbjct 1648 AATGCACATT--TATACCAATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTTCGAC 1591 Query 54352 CGTATCATAGATGCCCTCTATACTATCA-TCCATCATGTTAAGTAGAAAACAGCTAGACA 54410 | | | |||| || || || ||| || ||||||| ||||||||| || | Sbjct 1590 TGATTTAAAGATTCCTTCAATTGAGTCAGAGCACATTGTTAAG-AGAAAACAGGATGATA 1532 Query 54411 TTT---GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 54467 || || || | ||| | |||| || | |||||| ||||| || |||| || Sbjct 1531 GTTGAGGGCGAGGTGTAGCTGCCGC---GAACAGGGTAGGTGAAGCATGGATAAAATATC 1475 Query 54468 TTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTA 54527 |||| || | || || || ||||| |||||||| || ||||| | ||||||||||| Sbjct 1474 TTTCTGATAAAAGGTTATATGTCTCTATAGCTGAATCAATATCATTTCCATGAATTCCTA 1415 Query 54528 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCA 54587 | | || | ||| | |||||| || |||||||| |||| ||| |||||||||| | Sbjct 1414 CGGACACTCTCATAAGCATGTGTTGTGGTCTTTCGGCGATTTTGCCATTTATTTTCAATA 1355 Query 54588 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 54647 | || || |||||| || ||||| ||||| ||||||||| ||| || | || |||| Sbjct 1354 AATAAGAGCGTTCCAAGGTCTTAAATCCAAAGTAGTTGTATCCAAAATCCCTATCATAAA 1295 Query 54648 TAATAACTGAGTTGAGTTTATC 54669 ||||| ||| || | | |||| Sbjct 1294 TAATAGATGAATTCAATCTATC 1273 Score = 284 bits (314), Expect = 1e-71 Identities = 555/814 (68%), Gaps = 11/814 (1%) Strand=Plus/Minus Query 52828 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 52887 |||||| || ||||| | ||| ||||| || ||||| || ||||| ||||| | ||||| Sbjct 3287 TGCGGGCTTAGTACGCAAATAATACATACCAGTTTTAAGCCCGAGTTTCCATGCATAAAA 3228 Query 52888 ATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 52947 |||||| ||| || || |||| | || || |||| ||| || || | || ||||| Sbjct 3227 ATGCATTGATGTGAGCTTTCCATAATTTGGTTCCGCTACATGAATGTTAAATGACTGACT 3168 Query 52948 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGGA-ATT 53005 ||| || ||||| || || | || |||||||||| || ||| |||| | || ||| Sbjct 3167 TTGGTCAATGAAAGCACCACGATCAGCAGCCATTTGAATTGATG--CTTTGATAGAGATT 3110 Query 53006 TCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAGGTT-TGTATTC--TGAAT 53061 ||||||| |||||| |||| ||| | || ||| | | |||| | | |||| ||||| Sbjct 3109 TCCCAAACAGTTTTGTAAAGCTCACGTA-TATTTGCGGGAATTCTGTCTATTTCTTGAAT 3051 Query 53062 AGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGT 53121 ||| |||| | || || ||||| || ||||||| ||||| | | | || || Sbjct 3050 AGAACCACGTTTAGAAATGATTTCGTTCTTCATATCATCATCCCATAGATCTATTTCCGT 2991 Query 53122 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 53181 ||| || | | | || ||||||| || || || |||||||| || ||||| || | Sbjct 2990 CAAATCTTTCAATAAGTGATGATTAACCACCTGGAACTCTCCAGATAAGACTCTGCGGTT 2931 Query 53182 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 53241 ||||||||| || || || || | || |||||||| |||||||||||||| || || Sbjct 2930 ATAAATATTAGATGTGTATGGCTCGAAGGATTCATTATTACCCAAAATTTGAGCTGTGGA 2871 Query 53242 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 53301 || || ||||| || || | |||| ||||| | || | | | || || || Sbjct 2870 CGCTGTAGGCATTGGAGCAAGTAATAGGGAGTTTCTTACGCCATGCAATTTTATCTTTTC 2811 Query 53302 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 53361 ||| | | || ||| | ||| | || | || || || Sbjct 2810 TTTCAATGCTTGCCAGTCCCATAAGTCGGTTGGAGTTTTATCCCACATATCATACTGGAG 2751 Query 53362 AATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTA 53420 ||| || || || | | || |||| ||||||| || |||||||| ||||| ||||| | Sbjct 2750 AATTCCTTTGCTTACTGGAC-TTCCTTCATATGTTTCATATGGTCCATCCTTTTCAGCCA 2692 Query 53421 GTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT 53480 |||||||||| || || | || || || ||||| ||||| || || | | || | Sbjct 2691 GTTCACAACTAGCTTCAAGAGCTCCATAGTAAATTGTTTCAAAAATTTGTTGGTTCAACA 2632 Query 53481 CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 53540 ||| ||||| ||| ||| | ||| || | | ||| || || || | ||||||| Sbjct 2631 ATTGAGCTTCTTTGCTTTCATAAGGAAAACGCATAATAATCAAAGCATCAGAAAATCCTT 2572 Query 53541 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 53600 ||||||||||||| ||||||||||||| | ||| || | | ||||||||| | |||| Sbjct 2571 GAACACCAATACCTATAGGTCTATGTCGCAAATTCGATTTCTTAGCTTCTGGCAATGGAT 2512 Query 53601 AATAATTAATATCTATAATTTTATTGAGGTTTCT 53634 ||||||| | ||| || ||||| || | ||||| Sbjct 2511 AATAATTTACATCAATGATTTTGTTCAAATTTCT 2478 >seq116385 Length=1425 Score = 132 bits (146), Expect = 6e-26 Identities = 355/538 (66%), Gaps = 15/538 (3%) Strand=Plus/Minus Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197 || || || ||||| || || ||||| ||| || | ||| ||||| || || | || Sbjct 583 GCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAACCA 524 Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257 ||||| | || | ||| || | ||| || || | || || ||| |||||||| Sbjct 523 GGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACTTCCGCTGAAGAAAATG 464 Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG------CTGTCATGT 24311 ||||| || || ||||| ||||| | ||| || || | |||| ||| || Sbjct 463 CCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCAAAGGTGGCGGATTTACTGCCA--- 407 Query 24312 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 24371 ||||| ||||| || |||||||| || |||||||| | |||| | ||| || Sbjct 406 ATCCAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAAGGTAGATTCTCGACAGCGTTG 347 Query 24372 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 24431 ||||| ||| | |||| | ||| | || | || || |||| ||| |||||| Sbjct 346 AAGAGGAAGTCTCTTTCCTGTGGATCGCGGATGTAAGAGTCGATTAAAATACTGTACATT 287 Query 24432 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 24491 ||||| || | ||| || || || || || || || |||||||| | ||| || |||||| Sbjct 286 TCCGAGTGGACGTTCTCCATAGCAATCTGGAACCCATAGAAACAGCGAGCTTCAGTAATC 227 Query 24492 TGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCA 24551 || ||||| || ||||| | || |||||||| || || || || || || Sbjct 226 TGGACTTCCTGGGTGAAACGTTCCACCAAGTTTTCATTGACAATGCCATCGGAAGCGGCG 167 Query 24552 AAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAATC 24610 || || ||||| || || || || | || || || || || | || | ||| || Sbjct 166 AAGAAAGCCAAAACGTGGGAAATGAAGTGCTTCTC-TCCGGAATTCAACTTCTCCCAGTC 108 Query 24611 --ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 24666 ||| || || |||| ||| || || ||||| ||||| || || ||||| |||| Sbjct 107 GGCTTG--GTCCTTGGATAGATCGACCTCCTCCACAGTCCAGAACGAAGCCTCCGCCT 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592820783323920