Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq116385 235 6e-57 seq63354 129 6e-25 seq26001 111 2e-19 >seq116385 Length=1425 Score = 235 bits (260), Expect = 6e-57 Identities = 390/558 (70%), Gaps = 4/558 (1%) Strand=Plus/Plus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAG-CGAC 116713 |||| ||||| ||||||||||| || |||||||| || || ||||||||| | || |||| Sbjct 52 AGGCGGAGGCTTCGTTCTGGACTGTGGAGGAGGTCGATCTATCCAAGGAC-CAAGCCGAC 110 Query 116714 TGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCC 116773 |||||| ||||| | ||| || ||||| ||||| |||| || |||||| Sbjct 111 TGGGAGAAGTTGAATTCCGGAGAGAAGCACTTCATTTCCCACGTTTTGGCTTTCTTCGCC 170 Query 116774 GCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTG 116833 || ||| ||||| ||||| || || |||| || |||||| | ||||| || ||| | Sbjct 171 GCTTCCGATGGCATTGTCAATGAAAACTTGGTGGAACGTTTCACCCAGGAAGTCCAGATT 230 Query 116834 GCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATG 116893 | || || || || ||||| || || ||||| || ||||||||||| |||||||||||| Sbjct 231 ACTGAAGCTCGCTGTTTCTATGGGTTCCAGATTGCTATGGAGAACGTCCACTCGGAAATG 290 Query 116894 TATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGT-TTGTTGAA 116952 || | | |||||| | ||| | ||| | | |||| ||| | | | || || Sbjct 291 TACAGTATTTTAATCGACTCTTACATCCGCGATCCACAGGA-AAGAGACTTCCTCTTCAA 349 Query 116953 CGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGC 117012 ||| |||||| | || || || || ||||||| || ||||| || ||||| | Sbjct 350 CGCTGTCGAGAATCTACCTTGTGTGAAGAAGAAGGCTGACTGGGCATTGTCTTGGATTGG 409 Query 117013 CGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTT 117072 | | | | ||| |||| | |||| | | | || || || ||||| || ||| | || Sbjct 410 CAGTAAATCCGCCACCTTTGCCGAGAGAATCATTGCTTTTGCTGCCGTTGAAGGCATTTT 469 Query 117073 CTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCT 117132 ||| || ||||||||||| || || ||| | ||||| | || | ||||| || | Sbjct 470 CTTCAGCGGAAGTTTCGCCGCGATCTTCTGGTTGAAGAAGAGGGGTTTGATGCCTGGTTT 529 Query 117133 GACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTT 117192 ||| ||| ||| || || ||||| |||||||| || || || || ||||||||| | Sbjct 530 GACCTTCTCCAATGAACTTATCTCTAGGGACGAAGGACTCCACTGTGACTTTGCCGTCAT 589 Query 117193 GCTGTTCAAGCATTTGGT 117210 | ||| | | || ||||| Sbjct 590 GATGTACCATCACTTGGT 607 >seq63354 Length=4016 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || || || ||||| ||| | || |||||| | | Sbjct 1773 AATGCAGATCTTCGTCAAGACCCTTACTGGTAAGACCATTACCTTGGAAGTCGAACCTTC 1832 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | ||| |||||| || || | ||||||||||| ||||| | || || Sbjct 1833 CGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCA 1892 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| ||| || || || |||| |||| |||||| | ||||||||| Sbjct 1893 ACAACGTTTGATCTTCGCTGGAAAGCAATTGGAAGACGGACGCACCTTGTCCGACTACAA 1952 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||| |||||| |||| || || | |||||||| Sbjct 1953 CATCCAAAAGGAGTCCACCCTTCACTTGGTGTTGCG 1988 >seq26001 Length=10617 Score = 111 bits (122), Expect = 2e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||||||||| |||||||| |||||||| ||| | || || ||| | | Sbjct 8561 AATGCAAATTTTCGTAAAAACCCTCACGGGTAAAACCATTACCCTAGAAGTAGAACCTTC 8620 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | || | || |||| ||||||||||| || || | || || Sbjct 8621 GGATACTATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCA 8680 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | |||| ||| ||||| || || || |||| || || || ||| ||||| Sbjct 8681 GCAAAGATTGATCTTCGCTGGCAAGCAACTTGAAGACGGCCGTACTCTTTCCGATTACAA 8740 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||| || ||| | || || ||| ||||| Sbjct 8741 TATCCAAAAAGAGTCTACTCTTCATTTAGTG 8771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514437490109040