Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq27445 152 4e-32 seq82395 149 4e-31 >seq27445 Length=3274 Score = 152 bits (168), Expect = 4e-32 Identities = 376/565 (67%), Gaps = 4/565 (1%) Strand=Plus/Minus Query 97066 TAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGG 97125 || || |||| |||||| | | | |||| ||| || |||| ||| || ||||| Sbjct 2894 TAGATATGAGTATCTCCAATATTATGAACAAAGTCGCCAGTTTTCAAACCACAAACATGA 2835 Query 97126 GCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATA 97185 || ||||| | || |||| | ||| || ||||| || || ||||| || || || ||| Sbjct 2834 GCAATCATGTATGTCAATAAGGCATAACTGGCAATATTGAATGGCACTCCAAGACCAATA 2775 Query 97186 TCAGCTGATCTTTGATATAACTGA-CAGGAAAGCTTTCCATCACACACATAAAACTGACT 97244 || | | | ||||| || ||| || || | || ||| |||| | || || Sbjct 2774 TCCCCAGCACGCTGATA-AAGTGAACAAGACAACTCGTTATCCTCCACAAAGAATTGGAC 2716 Query 97245 CAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCACACAT 97304 || |||||| || || || ||||||||||||| ||| | |||||| | |||| Sbjct 2715 GAAGCAATGACATGGCGGTAAAGCCATTTTTGGAATATCCACAGGATTCCAGGACGACAT 2656 Query 97305 CAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATC 97364 | ||||||| |||||||| || | | ||| || ||||| | | || | ||||| Sbjct 2655 GCAGATTCTTCGGTCGGTTGGATTATTTTTTATAGTGTTAATAACATTTTTAAGCTGATC 2596 Query 97365 AACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCCTCCA 97424 || |||| || ||||| | | || || || |||||||||| | ||| Sbjct 2595 CACTCCTTGACCCATATAATCATCATGGCATGTTTTGTACTCAGCTCCAAAATAACGCCA 2536 Query 97425 TTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATC 97484 || || |||||||| || || ||||| ||||||||||||||| || || ||| || Sbjct 2535 CTGAAAACCATAAACCGGACCTAGGTCACCTTCTTCTCTATCAGTTAATCCGCACTTGTC 2476 Query 97485 TAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACA-CCAGATGCTGCAAGCTCTT 97543 || | | || | | ||| | |||||||| | | | | || || | |||| Sbjct 2475 TAGAAACTCTCTTGTGCTGTTTCCTTCCCAAATTTTAATATTTTTTTCCTTCAGGATCTT 2416 Query 97544 TGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAAAATA 97603 || |||||| |||| | | |||||||| | |||||| | ||| |||||||||| | Sbjct 2415 TG-AGTCAGTTTGTCCTTTAACGAACCACAAGAGCTCTTCCGCCACAGCTCTCCAAAAAA 2357 Query 97604 CTCTCTTAGTTGTTAAGAGAGGAAA 97628 || |||| || ||||| | |||||| Sbjct 2356 CTTTCTTTGTGGTTAACAAAGGAAA 2332 >seq82395 Length=2084 Score = 149 bits (164), Expect = 4e-31 Identities = 414/629 (66%), Gaps = 6/629 (1%) Strand=Plus/Plus Query 97003 AGTGTTGGGAAAGGCCTGGGAGTTCGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTC 97062 ||| | ||||| || || ||| || | | ||||| ||| | | || || | |||||| Sbjct 569 AGTTTAGGGAATGGTCTTGGAACTCTCTTCAGCTGTTCTTTCAAAGGTTCCACATGATTC 628 Query 97063 ACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAA-TCAGTGA- 97120 |||| ||||| ||||| |||| ||||| ||| || || | || | || | | Sbjct 629 TTGTAAACGTGAGTGTCTCCGAAAGAGTGAACAAAGTCGCCC--ACCTTTAGTCCGCAAA 686 Query 97121 CATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCCTAGTC 97180 ||||||| ||||| | || || | | ||| || ||||| || || || || || || | Sbjct 687 CATGGGCAATCATGTAGGTCAACAATGCATAACTGGCAATATTGAACGGAACTCCAAGCC 746 Query 97181 CCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACACACATAAAACT 97240 | | ||| || ||||| || || | | ||| || || | | | || || |||| Sbjct 747 CAACATCGGCAGATCTCTGGTACATCAAACATGAGAGTTCGTCCCCTTGAACGTAGAACT 806 Query 97241 GACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACATTCCAAGCAC 97300 || || |||||| || ||||| |||||||| || | || | | |||||| ||| Sbjct 807 GAGCGAAACAATGACAAGGAGGCAAAGCCATTTTGGGGAGGTCCACGGGATTCCAGGCAG 866 Query 97301 ACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTATCTGCTTTAATT 97360 |||| | || | ||| || || ||||| | | || | | ||| | | || | || Sbjct 867 ACATACAAATCCGTCTGTCCGTAGGGTTATTCTTGATTCTCTGAATGACGTCATTCAGTT 926 Query 97361 GATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTGATATTCTGCTCCAAAATGCC 97420 | || ||||||| ||| | | | | || ||| |||||||| ||||| | Sbjct 927 GGTCTACGCCTTTGTTGGTATAGTCATCGTGACAGGTTTTATACTCTGCTCCGAAATGAC 986 Query 97421 TCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCT 97480 |||||||||||| || || ||||| ||||| || |||||||| || ||| ||| || Sbjct 987 GCCATTGGAATCCGTAGACCGGTCCCAGGTCACCCTCTTCTCTGTCGGTGAATCCACACT 1046 Query 97481 TATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGCACA-CCAGATGCTGCAAGC 97539 | || ||| | || | | ||| | |||||||| |||| | | |||||| Sbjct 1047 TGTCCAAAAACTCTCTGGTACTATTGCCGTCCCAAATTCTCACATTCTTCTCTTGCAAGA 1106 Query 97540 TCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCTTCCACAACACCTCTCCAA 97599 |||| || | || ||| | ||||||||||| | || ||| | || |||||||| Sbjct 1107 TCTTGGC-ATTGGTCTGACCTTTTATAAACCACAAAAGCTCCTCCGCGACTCCTCTCCAG 1165 Query 97600 AATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 || ||||| || || || || | |||||| Sbjct 1166 AAAACTCTTTTCGTGGTCAACAAAGGAAA 1194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346271000153030