Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq27445 156 6e-33 seq56330 141 1e-28 seq30215 100 4e-16 >seq27445 Length=3274 Score = 156 bits (172), Expect = 6e-33 Identities = 379/569 (67%), Gaps = 9/569 (2%) Strand=Plus/Minus Query 205393 TATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTAGTTAAATGT 205452 || ||||| | || ||||||||||||| ||| || | ||| ||| | | ||| Sbjct 2894 TAGATATGAGTATCTCCAATATTATGAACAAAGTCGCCAGTTTTCAAACCACAAACATGA 2835 Query 205453 GCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCTAAACCCATA 205512 |||||||| || |||||||| |||||| |||| ||| ||||| || || | ||| ||| Sbjct 2834 GCAATCATGTATGTCAATAAGGCATAACTGGCAATATTGAATGGCACTCCAAGACCAATA 2775 Query 205513 TCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACATGAAATTGT 205572 || | | | ||||| | | ||| | | | |||| | | || ||||| Sbjct 2774 TCCCCAGCACGCTGATAAAGTGAACAAGACAACTCGTTATCCTCCA---CAAAGAATTGG 2718 Query 205573 ACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATTCCAGGCTGTT 205632 || || |||||||| || |||| | |||| ||| || ||| | ||||||||||| | Sbjct 2717 ACGAAGCAATGACATGGCGGTAAAGCCATTTTTGGAATATCCACAGGATTCCAGGACGAC 2658 Query 205633 AATATTATATTTC--TAGATTCAGGtttattttttattttatttatAATATGTGTTAATT 205690 | || ||| | | || || ||||||||||| | || |||| || | | | | Sbjct 2657 ATGCAGATTCTTCGGTCGGTT--GGATTATTTTTTATAGTGTTAATAACATTTTTAAGCT 2600 Query 205691 GATCAAATCCTTGATTTGTATAATTTGTATC-CATATCAATATATTTAGCACCAAAATGA 205749 |||| | ||||||| |||||| || ||| | | || | ||| ||||||| | Sbjct 2599 GATCCACTCCTTGACCCATATAATCATCATGGCATGTTT-TGTACTCAGCTCCAAAATAA 2541 Query 205750 CGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGt 205809 ||||| |||||||||||||| ||||||| |||||||||| ||||||| | || || | Sbjct 2540 CGCCACTGAAAACCATAAACCGGACCTAGGTCACCTTCTTCTCTATCAGTTAATCCGCAC 2481 Query 205810 ttttttatatattttaatgatccattttcatcccaaatatggattcctttattttttaGA 205869 || | || | | | | || | ||| | |||||||| | || ||| | || || Sbjct 2480 TTGTCTAGAAACTCTCTTGTGCTGTTTCCTTCCCAAATTTTAATATTTTTTTCCTTCAGG 2421 Query 205870 ATATTTGTATTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAA 205929 || |||| | |||| ||| | ||||| || | ||||| | | |||||||| Sbjct 2420 ATCTTTGAGTCAGTTTGTCCTTTAACGAACCACAAGAGCTCTTCCGCCACAGCTCTCCAA 2361 Query 205930 AACATTGATTTTGTTGTAAATAATGGAAA 205958 || | | ||||| || || || ||||| Sbjct 2360 AAAACTTTCTTTGTGGTTAACAAAGGAAA 2332 >seq56330 Length=10122 Score = 141 bits (156), Expect = 1e-28 Identities = 210/295 (71%), Gaps = 2/295 (1%) Strand=Plus/Plus Query 202936 TGCTTCTTCTGGTGATTTTGTCCATTCTAATAtttttttAGCCCAATACATTCTTAAATA 202995 ||||||||| ||||||| || ||| || || || ||||||||||||||||| |||||| | Sbjct 2539 TGCTTCTTCAGGTGATTCTGCCCACTCCAAAATCTTTTTAGCCCAATACATCCTTAAAAA 2598 Query 202996 TCCATGCATTTTACCATAGATAATCATTTGTTTTTGTGATGCATTCCATAAATTGTCATG 203055 |||||||||||| || | | | | || |||| | || |||||| || | |||| Sbjct 2599 TCCATGCATTTTCCCTTCATTCACTAACTGAATTTGGGCTGAATTCCACAAGTCATCATA 2658 Query 203056 AGTTAATGCATTTTCAAGTTGATATAAACTATATATATGTTTTCTAGTATCATTTTTATG 203115 ||| || | ||| | || || | | || | | | |||| | || ||| |||| Sbjct 2659 TGTTTTAGCCTCTTCCAATTCATTTTCTGTGTAAAAAGGACTTCTTTTGTCCTTTCTATG 2718 Query 203116 TTCATTTAGTGTTTTTATTGCCCAATTAT-TAGCACCATTTATATTATCGTAATTTTCAT 203174 ||||| | |||||| | ||||| | || ||| ||| || || | || ||||| | Sbjct 2719 ATCATTCAACGTTTTTCTAGCCCATTCATGTAG-TCCAGAAATGTTGTTATAGTTTTCTT 2777 Query 203175 TATAATAACAAAAATTATCACATAGTTCTTTACGAATAATAGCTTCTTCACAAAA 203229 ||| | |||||||||||| |||||| | |||| ||| |||||||||||||| Sbjct 2778 CGTAAAAGCAAAAATTATCAGCAAGTTCTCTTCGAACAATGGCTTCTTCACAAAA 2832 >seq30215 Length=1837 Score = 100 bits (110), Expect = 4e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| ||||||||||| || || || ||||| | | || || || ||||| Sbjct 1605 AAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAACAGCGTTTGATCTTCGCTGGAAAG 1664 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||||| || || |||| ||||| |||||| ||||||||||| || || ||| | ||| Sbjct 1665 CAATTGGAAGACGGTCGTACATTGTCAGATTACAATATTCAAAAGGAGTCCACTCTTCAT 1724 Query 124743 TTGGT 124747 ||||| Sbjct 1725 TTGGT 1729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 754309793827200