Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq26001 127 3e-24 seq17584 105 1e-17 >seq26001 Length=10617 Score = 127 bits (140), Expect = 3e-24 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| | | || ||||| | |||||| ||||| ||||| ||||| ||| Sbjct 8788 CCACCACGAAGACGAAGCACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAA 8729 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | || || || | ||| || ||||| || ||||||||||||||||| |||||| Sbjct 8728 AGAGTACGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGA 8669 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| ||||| ||||| |||||| ||| ||||||| Sbjct 8668 ATTCCCTCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTACT 8609 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| || || |||||||| || | ||||| | ||| ||||||||| Sbjct 8608 TCTAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGAAAATTTGCATT 8561 >seq17584 Length=4186 Score = 105 bits (116), Expect = 1e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 10407 AAAACTGA--TTTAATTATAGAAATTCCTAAAGGATGTTATGCAAGATTAGCTCCCAGAT 10464 |||||||| || || || || |||| |||||| |||| ||| | ||||| |||| Sbjct 2317 AAAACTGACATTCAA--ATCCAAGTTCCCGAAGGATCCTATGGTAGAGTGGCTCCAAGAT 2260 Query 10465 CTGATTTAGCTCTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATA 10524 ||| | ||| |||| || || || ||| |||| |||||||| || ||||||||||| Sbjct 2259 CTGGCCTGGCTGTAAAGAACTTCATCGATGTTGGCGCTGGAGTCATCGACGAAGATTACC 2200 Query 10525 GAGGAAATGTGGGAGTAATATTATTTAATCATTCTAATGAAGATTTTATAATAAATAGAG 10584 | |||||| | || || | || || || ||||| || | || || | || | | Sbjct 2199 GGGGAAATCTCGGCGTCGTTTTGTTCAACCATTCCGATCAGGACTTCGATGTCAAGAAGG 2140 Query 10585 GAGATAGAATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAAAT 10633 |||| ||||| ||||| |||| |||||| |||| || || || |||| Sbjct 2139 GAGACAGAATCGCTCAACTAATCTGTGAACAAATATTCTACCCAGAAAT 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742398293863680