Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq27445 183 2e-41 seq82395 150 1e-31 >seq27445 Length=3274 Score = 183 bits (202), Expect = 2e-41 Identities = 412/605 (68%), Gaps = 18/605 (3%) Strand=Plus/Plus Query 20035 AGAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAG 20094 |||||| | ||||| || ||||| || || || ||||||| || || | |||||| Sbjct 2323 AGAAATCAGTTTCCTTTGTTAACCACAAAGAAAGTTTTTTGGAGAGCTGTGGCGGAAGAG 2382 Query 20095 TTATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAG-TTAA 20153 | || ||||| |||||||| ||| | || | || | || || |||| | |||| Sbjct 2383 CTCTTGTGGTTCGTTAAAGGACAAACTGACTCAAA-GATCCTGAAGGAAAAAAATATTAA 2441 Query 20154 GATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATT---TGACAACCG 20210 |||||| | | | | | | | ||| || ||| ||||| ||| | | Sbjct 2442 AATTTGGGAAGGAAACAGCACAAGAGAGTTTCTAGACAAGTGCGGATTAACTGATA---G 2498 Query 20211 TCAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATA 20270 |||| || || | ||||| || ||||| ||||| ||| | ||||||||||||| || Sbjct 2499 AGAAGAAGGTGACCTAGGTCCGGTTTATGGTTTTCAGTGGCGTTATTTTGGAGCTGAGTA 2558 Query 20271 TGTTGACATGAACACAA--ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATT 20328 ||||| || | ||||| | || |||||||| ||||| | ||||||||||| Sbjct 2559 CAAA-ACATGC-CATGATGATTATATGGGTCAAGGAGTGGATCAGCTTAAAAATGTTATT 2616 Query 20329 AATTTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATG-CG-CCTGGAACGCTA 20386 || || |||| || |||| |||| ||||||| | ||| || ||||||| || Sbjct 2617 AACACTATAAAAAATAATCCAACCGACCGAAGAATC--TGCATGTCGTCCTGGAATCCTG 2674 Query 20387 AAGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATG-CCAATTTTACGTTGCT 20445 ||| | || ||||||||| || ||||||||| |||| | |||||| | || | Sbjct 2675 TGGATATTCCAAAAATGGCTTTACCGCCATGTCAT-TGCTTCGTCCAATTCTTTGTGGAG 2733 Query 20446 AATAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCT 20505 |||| || ||||| ||| | | ||||| || | | ||||| || || || || || Sbjct 2734 GATAACGAGTTGTCTTGTTCACTTTATCAGCGTGCTGGGGATATTGGTCTTGGAGTGCCA 2793 Query 20506 TTCAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAA 20565 ||||||||||| |||||||| | | || || |||||||| |||||| | ||| ||| Sbjct 2794 TTCAATATTGCCAGTTATGCCTTATTGACATACATGATTGCTCATGTTTGTGGTTTGAAA 2853 Query 20566 ACGGGTGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCT 20625 || || ||||| || || | || ||||| | ||||| ||| || ||| | || ||| Sbjct 2854 ACTGGCGACTTTGTTCATAATATTGGAGATACTCATATCTACAAAAACCATCTGGATCCT 2913 Query 20626 TTAAA 20630 ||||| Sbjct 2914 TTAAA 2918 >seq82395 Length=2084 Score = 150 bits (166), Expect = 1e-31 Identities = 488/746 (65%), Gaps = 10/746 (1%) Strand=Plus/Minus Query 20036 GAAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGT 20095 || || | ||||| || || || |||||| | || || |||| ||| || | || ||| Sbjct 1202 GAGATCAGTTTCCTTTGTTGACCACGAAAAGAGTTTTCTGGAGAGGAGTCGCGGAGGAGC 1143 Query 20096 TATTATGGTTTATTAAAGGATCA-ACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAG 20154 | || |||||||| ||||| ||| || ||| | | || |||| | | ||| | | || Sbjct 1142 TTTTGTGGTTTATAAAAGG-TCAGACCAATGCCAA-GATCTTGCAAGAGAAGAATGTGAG 1085 Query 20155 A-TTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGTCA 20213 | ||||| || || | | | | ||||| ||| |||||| | || | | Sbjct 1084 AATTTGGGACGGCAATAGTACCAGAGAGTTTTTGGACAAGTGTGGATTCACCGACAGAGA 1025 Query 20214 AGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGT 20273 |||||| || |||| || || || ||||| |||||| | ||||| ||||| || ||| Sbjct 1024 AGAGGGTGACCTGGGACCGGTCTACGGATTCCAATGGCGTCATTTCGGAGCAGAGTATAA 965 Query 20274 TGACATGAACACAA--ATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAAT 20331 || || ||| | | ||| |||| ||||| ||| | | | || ||| | Sbjct 964 A-ACCTGT-CACGATGACTATACCAACAAAGGCGTAGACCAACTGAATGACGTCATTCAG 907 Query 20332 TTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGAT 20391 ||| || | ||||| | |||||| | ||| | | | |||||||| | || Sbjct 906 AGAATCAAGAATAACCCTACGGACAGACGGATTTGTATGTCTGCCTGGAATCCCGTGGAC 847 Query 20392 GTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGC-CAATTTTACGTTGCTAATAA 20450 | || ||||||||||||||| |||||| || | || || || |||||| | Sbjct 846 CTCCCCAAAATGGCTTTGCCTCCTTGTCAT-TGTTTCGCTCAGTTCTACGTTCAAGGGGA 788 Query 20451 TGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAA 20510 ||| | || ||| ||||| || |||| || ||| | || || || ||||| ||||| Sbjct 787 CGAACTCTCATGTTTGATGTACCAGAGATCTGCCGATGTTGGGCTTGGAGTTCCGTTCAA 728 Query 20511 TATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGG 20570 |||||| |||||||| || | || || |||||||| |||||| | |||| ||| Sbjct 727 TATTGCCAGTTATGCATTGTTGACCTACATGATTGCCCATGTTTGCGGACTAAAGGTGGG 668 Query 20571 TGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAA 20630 ||||| || ||| | | |||||| | || ||||| |||||| | |||||||| || Sbjct 667 CGACTTTGTTCACTCTTTCGGAGACACTCACGTTTACAAGAATCATGTGGAACCTTTGAA 608 Query 20631 ATTACAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAA 20690 | |||| | | || |||| || |||||| | || ||| | || | ||| | Sbjct 607 AGAACAGCTGAAGAGAGTTCCAAGACCATTCCCTAAACTGGTCATAAACCGTAAAGTTGA 548 Query 20691 AGATATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTC 20750 | | || | || || ||| || ||||| | ||||| ||| |||| | | Sbjct 547 AAAAATCGAGGACTTCAAATTCGAAGATTTCACTATCGAAGGATATGATCCATACCCAAC 488 Query 20751 AATTCCAATGGAAATGTCTGTTTAAT 20776 ||| |||||||||| |||||| || Sbjct 487 CATTAAAATGGAAATGGCTGTTTGAT 462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398593484489155