Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq93051 206 2e-48 seq26001 91.5 1e-13 >seq93051 Length=3786 Score = 206 bits (228), Expect = 2e-48 Identities = 641/985 (65%), Gaps = 28/985 (3%) Strand=Plus/Minus Query 23066 TACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTG 23125 || ||||| ||||| || || |||||||| || ||||| || || | || || || Sbjct 2192 TATTCTACTATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTA 2133 Query 23126 CTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGAC 23185 ||||| | ||| || | ||| || || | |||||| || || || || || || || ||| Sbjct 2132 CTTTTCCTATTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGAC 2073 Query 23186 TCGATGATCGCTCGCCACA-TAGTCTGAGCGTGAACACGTCGCACG--TACCTG--CCTT 23240 ||||| || || ||||| | || ||||| | || | ||| || || || | Sbjct 2072 TCGATTATGGCAAACCACAATTGT-TGAGCTTTAA----TTTTACGGTTAGCTTTTCCCT 2018 Query 23241 CTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGG 23300 | | |||||| ||| ||| | ||||| || | || || || || || | Sbjct 2017 CCTTCTCGTATTTTACGTAGAGATTCTCAAACTCCTCTCCCCAAACATCATGTAGCCCTG 1958 Query 23301 GCGATTGCATCGGACACATGA--GAC---TCCACATTGAGTCATTTTCAACGCGTCTCAT 23355 | ||| |||||||| | ||| ||| ||| || ||| |||||| |||| Sbjct 1957 GACATTTATGGGGACACATCAATGACCAATCCTCAT-----CAGCTTCTACGCGTTTCAT 1903 Query 23356 AAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCC 23415 || | ||| || ||||||| ||| || || || || | || || | ||| ||||| || Sbjct 1902 GAATAAATCGGGAATCCATAAAGCATAAAATAGATCTCTTGCTCGGAGCTCATCTTTACC 1843 Query 23416 GGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAAC 23475 || || || ||||| || ||||| || || | || | |||||| ||||| | |||| Sbjct 1842 TGTATTTTTCTTCAAGTCTAAAAATTCAAAAATATCAGAATGCCATGGCTCTAAATAAAT 1783 Query 23476 GGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTA 23535 ||||| || || ||||| ||||| || |||||||| || || || ||| ||| | Sbjct 1782 AGCAAAAGCTCCGGGTCTTTTATTTCCACCCTGATCCACATATTTTGCAACGTTATTGAA 1723 Query 23536 CACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACC 23595 |||||| ||||| || || | |||||| || | ||| || || | | | | || Sbjct 1722 CACTCTAAGCATAGGTACTAAACCGTTAGAAGTGCCATTAGTTCCTGCTATAGTAGTGCC 1663 Query 23596 TTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 ||| || |||| | || || | | ||| || || || | || || || ||||| || Sbjct 1662 TTTAGCACGAATGCAATGCACATTTATACCAATTCCGCCAGCGGACTTAGAAATCATTGC 1603 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC----CTCTTTGGTCGCGACCA 23711 |||||||| | | | |||| || || || ||| | | ||| | | | Sbjct 1602 GCATTGTTCGACTGATTTAAAGATTCCTTCAATTGAGTCAGAGCACATTGTT----AAGA 1547 Query 23712 AGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGT 23771 ||||| || || | ||| | || ||||| |||| |||||| || || || | Sbjct 1546 GAAAACAGGATGATAGTTGAGGGCGAGGTGTAGCTGCCGCGAACAGGGTAGGTGAAGCAT 1487 Query 23772 GCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTC 23831 | |||| |||| | || | || || || || || || || | |||||| || | || Sbjct 1486 GGATAAAATATCTTTCTGATAAAAGGTTATATGTCTCTATAGCTGAATCAATATCATTTC 1427 Query 23832 CGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGT 23891 | || || || | || || | ||| | ||||| ||| ||||| ||| | | ||| | Sbjct 1426 CATGAATTCCTACGGACACTCTCATAAGCATGTGTTGTGGTCTTTCGGCGATTTTGCCAT 1367 Query 23892 TAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGT 23951 | ||||| || | ||| || |||| || || ||||||||||| |||| || ||| | Sbjct 1366 TTATTTTCAATAAATAAGAGCGTTCCAAGGTCTTAAATCCAAAGTAGTTGTATCCAAAAT 1307 Query 23952 CACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAAT 24011 | | ||| | | || | |||||||| | | ||||| | ||||| | ||||| Sbjct 1306 CCCTATCATAAATAATAGATGAATTCAATCTATCGGCATTCTTTGTAATGATATCGTAAT 1247 Query 24012 GAAAATTCGATATCATCGGCGTTTT 24036 || ||| || ||||| || | ||| Sbjct 1246 GACAATCAGAAATCATTGGGGATTT 1222 Score = 203 bits (224), Expect = 3e-47 Identities = 568/861 (66%), Gaps = 17/861 (2%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || || || |||||||| || || || || || || || || || | ||||||||| || Sbjct 3316 TTATCAACAGTAAACTGAATAGCATTAGCTGCGGGCTTAGTACGCAAATAATACATACCA 3257 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG- 22224 || || || || | ||||| || |||||||| || || || | ||||||||| | || Sbjct 3256 GTTTTAAGCCCGAGTTTCCATGCATAAAAATGCATTGATGTGAGCTTTCCATAATTTGGT 3197 Query 22225 -CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 | | |||| | || || |||||||| || || || || || || ||||| || | Sbjct 3196 TCCGCTACATGAATG--TTAAATGACTGACTTTGGTCAATGAAAGCACCACGATCAGCAG 3139 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| | || ||| || || |||||||| || || ||||| || | | || | Sbjct 3138 CCATTTGAATTGATGCTTTGATAGAGATTTCCCAAACAGTTTTGTAAAGCTCACGTATAT 3079 Query 22344 CTAACGGTATCGATTCGATCCTCTGGAC--GGACC-CGTTATTGTGTATGATCAAATTTT 22400 | || || || || ||| || | ||| |||| | ||||| || | Sbjct 3078 TTGCGGGAATTCTGTCTATT-TCTTGAATAGAACCACGTT--TAGAAATGATTTCGTTCT 3022 Query 22401 TAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA 22460 | || ||| | ||| | | | || | ||||||||||| | | ||| | || |||| Sbjct 3021 TCATATCATCATCCCATAGATCTATTTCCGTCAAATCTTTCAATAAGTGATGATTAACCA 2962 Query 22461 CTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAG 22520 | || ||||| || || ||||| | ||| | ||||| || |||||| | || ||||| | Sbjct 2961 CCTGGAACTCTCCAGATAAGACTCTGCGGTTATAAATATTAGATGTGTATGGCTCGAAGG 2902 Query 22521 ATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCG 22580 ||||||| || |||| || ||||| || || || || ||||| || || | | ||| | Sbjct 2901 ATTCATTATTACCCAAAATTTGAGCTGTGGACGCTGTAGGCATTGGAGCAAGTAATAGGG 2842 Query 22581 AGTTTCTCAAGCCGTGC--TTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATC 22638 ||||||| | ||| ||| ||| | |||| || | | | | ||||||||| | || Sbjct 2841 AGTTTCTTACGCCATGCAATTTTATCTTTT-CTTTCAATGCTTG-CCAGTCCCATAAGTC 2784 Query 22639 GGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCC 22698 || || || || ||||||||||| || || | | || || | || || || Sbjct 2783 GGTTGGAGT---TTTATCCCACATATCATACTGGAGAATTCCTTTGCTTACTGGACTTCC 2727 Query 22699 TTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCC 22758 ||| || ||||| || || |||| | | || ||||| || || || || | || || Sbjct 2726 TTCATATGTTTCATATGGTCCATCCTTTTCAGCCAGTTCACAACTAGCTTCAAGAGCTCC 2667 Query 22759 GTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGG 22818 || || || || || || |||| | |||||| || | |||||| || || Sbjct 2666 ATAGTAAATTGTTTCAAAAATTTGTTGGTTCAACAATTGAGCTTCTTTGCTTTCATAAGG 2607 Query 22819 CATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTT 22878 | |||||| || | || || || | | || ||||| || ||||| || |||| | Sbjct 2606 AAAACGCATAATAATCAAAGCATCAGAAAATCCTTGAACACCAATACCTATAGGTCTATG 2547 Query 22879 TTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTT 22938 | || |||||| || || || ||||| ||||| |||| ||| || || |||| Sbjct 2546 TCGCAAATTCGATTTCTTAGCTTCTGGCAATGGATAATAATTTACATCAATGATTTTGTT 2487 Query 22939 CAAGTTTCTGGTCACAATTTT 22959 ||| ||||| || | ||| || Sbjct 2486 CAAATTTCTTGTAATAATCTT 2466 >seq26001 Length=10617 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||||||||| || || || || ||||| || ||| | || || ||||| || Sbjct 8562 ATGCAAATTTTCGTAAAAACCCTCACGGGTAAAACCATTACCCTAGAAGTAGAACCTTCG 8621 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || ||| | || ||||| || || | || || || ||| Sbjct 8622 GATACTATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 8681 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | | || ||||||||||| || | |||||| ||| | |||||| || Sbjct 8682 CAAAGATTGATCTTCGCTGGCAAGCAACTTGAAGACGGCCGTACTCTTTCCGATTACAAT 8741 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || |||||||| || ||||||||| | || ||| Sbjct 8742 ATCCAAAAAGAGTCTACTCTTCATTTAGTGCTT 8774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445090066501680