Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq116385 140 6e-28 seq82395 129 1e-24 >seq116385 Length=1425 Score = 140 bits (154), Expect = 6e-28 Identities = 219/313 (70%), Gaps = 3/313 (1%) Strand=Plus/Plus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 || ||||| || |||||||| || ||||| || || ||||| | || |||||| | Sbjct 611 GCTTTTGCCGCTGTTGAAGGCATTTTCTTCAGCGGAAGTTTCGCCGCGATCTTCTGGTTG 670 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| |||||| | |||||||| | |||| ||||||||| | || |||||||||||| Sbjct 671 AAGAAGAGGGGTTTGATGCCTGGTTTGACCTTCTCCAATGAACTTATCTCTAGGGACGAA 730 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCA 102100 || || || | |||||||| |||| ||| | | || || | | ||||| Sbjct 731 GGACTCCACTGTGACTTTGCCGTCATGATGT---ACCATCACTTGGTCCAAAGGCCATCC 787 Query 102101 AGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACA 102160 | || || || | ||||| || || || || ||||||||||||||| | || Sbjct 788 AAGGACAGAATCCGCGAAATCATCCTCGATGCTGTTAAAATTGAACAAGAATTCTTGACT 847 Query 102161 GTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAA 102220 ||||||| || || | | || |||||||| | | ||| ||||||||||||| Sbjct 848 AAAGCCCTGCCCGTCAACCTCATCGGCATGAACTGTGACCTCATGTCCCAGTACATTGAA 907 Query 102221 TTTGTGGCAGATA 102233 |||||||| |||| Sbjct 908 TTTGTGGCTGATA 920 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||| |||||||| |||||||| || ||||| || || ||||| | || |||||| Sbjct 442 TTGCTTTTGCTGCCGTTGAAGGCATTTTCTTCAGCGGAAGTTTCGCCGCGATCTTCTGGT 501 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||||| |||||| | |||||||| | |||| ||||||||| | || |||||||||| Sbjct 502 TGAAGAAGAGGGGTTTGATGCCTGGTTTGACCTTCTCCAATGAACTTATCTCTAGGGACG 561 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGT 102071 |||| || || | |||||||| |||| ||| Sbjct 562 AAGGACTCCACTGTGACTTTGCCGTCATGATGT 594 >seq82395 Length=2084 Score = 129 bits (142), Expect = 1e-24 Identities = 217/309 (70%), Gaps = 4/309 (1%) Strand=Plus/Minus Query 35152 CGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAATGAGGTTCTCTCTTCG 35211 |||| | |||||| |||||| | || |||||||| || ||||||||| ||||| Sbjct 1264 CGATCGCACTGGAGTTGGAACTTTGTCGATTTTTGGGTGTCAGATGAGGTTCAACCTTCG 1205 Query 35212 AGACGA-CACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAG 35270 | || || | |||| | | || || || | | |||||||||||||||| | ||| | Sbjct 1204 TGGAGATCAGT-TTCCTTTGTTGACCACGAAAAGAGTTTTCTGGAGAGGAGTCGCGGAGG 1146 Query 35271 AACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCA-AGAAGAAGATA 35329 | || | |||||| || | || | || | ||||| || | || | ||||||| | Sbjct 1145 AGCTTTTGTGGTTTATAAAAGGTCAGACCAATGCCAA-GATCTTGCAAGAGAAGAATGTG 1087 Query 35330 CACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGA 35389 || ||| ||| ||| | | | || |||||||||| | || || ||| ||| Sbjct 1086 AGAATTTGGGACGGCAATAGTACCAGAGAGTTTTTGGACAAGTGTGGATTCACCGACAGA 1027 Query 35390 GCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT 35449 | |||||| || ||||||| || ||||||||||||||||||||||| || || || ||| Sbjct 1026 GAAGAGGGTGACCTGGGACCGGTCTACGGATTCCAATGGCGTCATTTCGGAGCAGAGTAT 967 Query 35450 GATACCTGT 35458 | |||||| Sbjct 966 AAAACCTGT 958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988045030196945