Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29]
121,379 sequences; 412,270,594 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq93051 389 5e-103
seq116385 154 2e-32
seq36631 87.8 2e-12
>seq93051
Length=3786
Score = 389 bits (430), Expect = 5e-103
Identities = 678/973 (70%), Gaps = 20/973 (2%)
Strand=Plus/Minus
Query 62936 GTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTAT 62995
||||||||| | ||||| | ||| || || || | |||| | | | | ||||| ||
Sbjct 2244 GTTCAATGCTATGGATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAATATTCTAC 2185
Query 62996 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63055
||| || ||||||||||| || || || || || |||| |||||||||||||| || |
Sbjct 2184 TATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCT 2125
Query 63056 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115
||||| ||||| ||||| | ||| |||| ||||||||||||| || || || || ||
Sbjct 2124 ATTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTCGATTAT 2065
Query 63116 CGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTCGTATA 63174
|| ||| | | |||| || ||| || | || | | ||| | || | ||||||
Sbjct 2064 GGCAAACCACAATTGTTGAGCTTTAATTTTACGGTTAGCTTTTCCCTCCT-TCTCGTATT 2006
Query 63175 GA--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATC 63232
||| | | || || ||||| ||||||||||||| | | | ||||||| ||
Sbjct 2005 TTACGTAGAGATTC--TCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACATTTATG 1948
Query 63233 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63292
||||||||||| ||||| || | ||| | | || |||||||| || | ||| |||||
Sbjct 1947 GGGACACATCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATCGGGAAT 1888
Query 63293 CCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352
||| | ||| |||||||||||||| || | || || || |||||||| || || |
Sbjct 1887 CCATAAAGCATAAAATAGATCTCTTGCTCGGAGCTCATCTTTACCTGTATTTTTCTTCAA 1828
Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412
|| | || | | ||||||||||||||| || || || || || || | | |||| ||
Sbjct 1827 GTCTAAAAATTCAAAAATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAGCTCCGGG 1768
Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472
| ||| ||||| |||||||| | ||| | || |||||| | ||||| | ||| ||
Sbjct 1767 TCTTTTATTTCCACCCTGATCCACATATTTTGCAACGTTATTGAACACTCTAAGCATAGG 1708
Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATA-TAGCCTCCACTGGCACGAAT-- 63529
| | |||||| || | ||||| || || | ||| ||| || | ||||||||
Sbjct 1707 TACTAAACCGTTAGAAGTGCCATTAGTTCCTGCTATAGTAG-TGCCTTTAGCACGAATGC 1649
Query 63530 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63589
| | | ||| || ||| ||||| || || ||||| || | ||||||| ||| |
Sbjct 1648 AATGCACATT--TATACCAATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTTCGAC 1591
Query 63590 CGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACA 63648
| | | |||| ||||| || ||| | || ||||||| ||||||||| || |
Sbjct 1590 TGATTTAAAGATTCCTTCAATTGAGTCAGAGCACATTGTTAAG-AGAAAACAGGATGATA 1532
Query 63649 TTT---GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 63705
|| || || | |||| | |||| || | |||||| ||||| || |||| ||
Sbjct 1531 GTTGAGGGCGAGGTGTAGCTGCCGC---GAACAGGGTAGGTGAAGCATGGATAAAATATC 1475
Query 63706 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 63765
|||| || | || || || ||||| |||||||| || ||||| | |||||||||||
Sbjct 1474 TTTCTGATAAAAGGTTATATGTCTCTATAGCTGAATCAATATCATTTCCATGAATTCCTA 1415
Query 63766 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACA 63825
| | || | ||| | |||||| || |||||||| | |||||| ||||||||||| |
Sbjct 1414 CGGACACTCTCATAAGCATGTGTTGTGGTCTTTCGGCGATTTTGCCATTTATTTTCAATA 1355
Query 63826 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 63885
| || || |||||| || ||||| ||||| ||||||||| ||| || | || ||||
Sbjct 1354 AATAAGAGCGTTCCAAGGTCTTAAATCCAAAGTAGTTGTATCCAAAATCCCTATCATAAA 1295
Query 63886 TAATAACCGAATT 63898
||||| |||||
Sbjct 1294 TAATAGATGAATT 1282
Score = 293 bits (324), Expect = 3e-74
Identities = 560/815 (69%), Gaps = 13/815 (2%)
Strand=Plus/Minus
Query 62066 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 62125
|||||| || ||||| | ||| ||||| || ||||| || ||||| ||||| | |||||
Sbjct 3287 TGCGGGCTTAGTACGCAAATAATACATACCAGTTTTAAGCCCGAGTTTCCATGCATAAAA 3228
Query 62126 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 62185
|||||| || || || |||| | || || |||| ||| || || | || |||||
Sbjct 3227 ATGCATTGATGTGAGCTTTCCATAATTTGGTTCCGCTACATGAATGTTAAATGACTGACT 3168
Query 62186 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGCA-ATT 62243
||| || ||||| || || | || |||||||||| || ||| |||| | | |||
Sbjct 3167 TTGGTCAATGAAAGCACCACGATCAGCAGCCATTTGAATTGATG--CTTTGATAGAGATT 3110
Query 62244 TCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAGGTT-TGTATTC--TGAAT 62299
||||||| |||||| |||| ||| | || ||| | | |||| | | |||| |||||
Sbjct 3109 TCCCAAACAGTTTTGTAAAGCTCACGTA-TATTTGCGGGAATTCTGTCTATTTCTTGAAT 3051
Query 62300 GGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGT 62359
|| |||| | || || ||||| || ||||||| ||||| | | | || ||
Sbjct 3050 AGAACCACGTTTAGAAATGATTTCGTTCTTCATATCATCATCCCATAGATCTATTTCCGT 2991
Query 62360 TAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGT 62419
||| || | | | || | ||||| || ||||| |||||||| || ||||| || |
Sbjct 2990 CAAATCTTTCAATAAGTGATGATTAACCACCTGGAACTCTCCAGATAAGACTCTGCGGTT 2931
Query 62420 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62479
||||||||| || || || || | || |||||||| |||||||||||||| || ||
Sbjct 2930 ATAAATATTAGATGTGTATGGCTCGAAGGATTCATTATTACCCAAAATTTGAGCTGTGGA 2871
Query 62480 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62539
|| || ||||| || || | |||| ||||| | || | | | || || ||
Sbjct 2870 CGCTGTAGGCATTGGAGCAAGTAATAGGGAGTTTCTTACGCCATGCAATTTTATCTTTTC 2811
Query 62540 TTTTAGATG-TTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTA 62598
||| | ||| || ||| | ||| | || | || | ||| || |
Sbjct 2810 TTTCA-ATGCTTGCCAGTCCCATAAGTCGGTTGGAGTTTTATCCCACATATCATACTGGA 2752
Query 62599 GAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCT 62657
|||| || || || | | || |||| ||||||| ||||||||||| ||||| |||||
Sbjct 2751 GAATTCCTTTGCTTACTGGAC-TTCCTTCATATGTTTCATATGGTCCATCCTTTTCAGCC 2693
Query 62658 AGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGA 62717
|||| |||||| || || | || || || ||||| |||||||| || | | || |
Sbjct 2692 AGTTCACAACTAGCTTCAAGAGCTCCATAGTAAATTGTTTCAAAAATTTGTTGGTTCAAC 2633
Query 62718 TCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCT 62777
||| ||||| ||| ||| | ||| || | | ||| || || || | ||||||
Sbjct 2632 AATTGAGCTTCTTTGCTTTCATAAGGAAAACGCATAATAATCAAAGCATCAGAAAATCCT 2573
Query 62778 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62837
|||||||||||||| ||||||||||||| | ||| || | | ||||||||| | |||
Sbjct 2572 TGAACACCAATACCTATAGGTCTATGTCGCAAATTCGATTTCTTAGCTTCTGGCAATGGA 2513
Query 62838 TAATAATTAATATCTATAATTTTATTGAGATTTCT 62872
|||||||| | ||| || ||||| || | ||||||
Sbjct 2512 TAATAATTTACATCAATGATTTTGTTCAAATTTCT 2478
>seq116385
Length=1425
Score = 154 bits (170), Expect = 2e-32
Identities = 362/539 (67%), Gaps = 17/539 (3%)
Strand=Plus/Minus
Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644
|| || || ||||| || || ||||| ||| || | ||| || || || || | ||
Sbjct 583 GCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAACCA 524
Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704
||||| | || | ||| || | ||| || || | ||||| |||| ||||| ||
Sbjct 523 GGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACTTCCGCTGAAGAAAATG 464
Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG------CTGTCATGT 33758
||||| || |||||||| ||||| | |||||| || | |||| ||| ||
Sbjct 463 CCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCAAAGGTGGCGGATTTACTGCCA--- 407
Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818
||||| ||||| || |||||||| || |||||||| | | || | || ||
Sbjct 406 ATCCAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAAGGTAGATTCTCGACAGCGTTG 347
Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878
||||| ||| | |||| | ||| | |||| ||||| |||| ||| ||||||
Sbjct 346 AAGAGGAAGTCTCTTTCCTGTGGATCGCGGATGTAAGAGTCGATTAAAATACTGTACATT 287
Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938
||||| || | ||| || || || ||||| || || |||||||| | ||| || ||||||
Sbjct 286 TCCGAGTGGACGTTCTCCATAGCAATCTGGAACCCATAGAAACAGCGAGCTTCAGTAATC 227
Query 33939 TGCACTT-CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997
|| |||| ||| ||| ||||| | || |||||||| || || ||||| || ||
Sbjct 226 TGGACTTCCTGGGTGAAA-CGTTCCACCAAGTTTTCATTGACAATGCCATCGGAAGCGGC 168
Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAAT 34056
|| || ||||| || || || || | || || || || || | || | ||| |
Sbjct 167 GAAGAAAGCCAAAACGTGGGAAATGAAGTGCTTCTC-TCCGGAATTCAACTTCTCCCAGT 109
Query 34057 C--ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113
| ||| || || |||| ||| || || ||||| ||||| || || ||||| ||||
Sbjct 108 CGGCTTG--GTCCTTGGATAGATCGACCTCCTCCACAGTCCAGAACGAAGCCTCCGCCT 52
>seq36631
Length=6711
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/108 (78%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 28697 ATACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAA 28756
|| |||| ||||||||| || || | |||||||| ||||||||||| ||||| | |||
Sbjct 1890 ATTCCCAGTTCCTTGACTTGCGTCAACGATCTCCAGTCCATGTTAGCACTTCCAATGTAA 1831
Query 28757 ATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCT 28804
| ||| |||||||| ||||||| ||||| || | |||||| |||
Sbjct 1830 AAGTGTTGATTATCAGCAATCCAAAGCTTTGTGTGCAAAACTCCACCT 1783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628862017119120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |