Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq93051 389 5e-103 seq116385 154 2e-32 seq36631 87.8 2e-12 >seq93051 Length=3786 Score = 389 bits (430), Expect = 5e-103 Identities = 678/973 (70%), Gaps = 20/973 (2%) Strand=Plus/Minus Query 62936 GTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTAT 62995 ||||||||| | ||||| | ||| || || || | |||| | | | | ||||| || Sbjct 2244 GTTCAATGCTATGGATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAATATTCTAC 2185 Query 62996 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63055 ||| || ||||||||||| || || || || || |||| |||||||||||||| || | Sbjct 2184 TATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCT 2125 Query 63056 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63115 ||||| ||||| ||||| | ||| |||| ||||||||||||| || || || || || Sbjct 2124 ATTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTCGATTAT 2065 Query 63116 CGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTCGTATA 63174 || ||| | | |||| || ||| || | || | | ||| | || | |||||| Sbjct 2064 GGCAAACCACAATTGTTGAGCTTTAATTTTACGGTTAGCTTTTCCCTCCT-TCTCGTATT 2006 Query 63175 GA--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATC 63232 ||| | | || || ||||| ||||||||||||| | | | ||||||| || Sbjct 2005 TTACGTAGAGATTC--TCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACATTTATG 1948 Query 63233 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63292 ||||||||||| ||||| || | ||| | | || |||||||| || | ||| ||||| Sbjct 1947 GGGACACATCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATCGGGAAT 1888 Query 63293 CCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63352 ||| | ||| |||||||||||||| || | || || || |||||||| || || | Sbjct 1887 CCATAAAGCATAAAATAGATCTCTTGCTCGGAGCTCATCTTTACCTGTATTTTTCTTCAA 1828 Query 63353 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63412 || | || | | ||||||||||||||| || || || || || || | | |||| || Sbjct 1827 GTCTAAAAATTCAAAAATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAGCTCCGGG 1768 Query 63413 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63472 | ||| ||||| |||||||| | ||| | || |||||| | ||||| | ||| || Sbjct 1767 TCTTTTATTTCCACCCTGATCCACATATTTTGCAACGTTATTGAACACTCTAAGCATAGG 1708 Query 63473 AATAATACCGTTTGATATACCATTGGTACCGGAGATA-TAGCCTCCACTGGCACGAAT-- 63529 | | |||||| || | ||||| || || | ||| ||| || | |||||||| Sbjct 1707 TACTAAACCGTTAGAAGTGCCATTAGTTCCTGCTATAGTAG-TGCCTTTAGCACGAATGC 1649 Query 63530 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63589 | | | ||| || ||| ||||| || || ||||| || | ||||||| ||| | Sbjct 1648 AATGCACATT--TATACCAATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTTCGAC 1591 Query 63590 CGTGTCATAGATGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACA 63648 | | | |||| ||||| || ||| | || ||||||| ||||||||| || | Sbjct 1590 TGATTTAAAGATTCCTTCAATTGAGTCAGAGCACATTGTTAAG-AGAAAACAGGATGATA 1532 Query 63649 TTT---GGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 63705 || || || | |||| | |||| || | |||||| ||||| || |||| || Sbjct 1531 GTTGAGGGCGAGGTGTAGCTGCCGC---GAACAGGGTAGGTGAAGCATGGATAAAATATC 1475 Query 63706 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 63765 |||| || | || || || ||||| |||||||| || ||||| | ||||||||||| Sbjct 1474 TTTCTGATAAAAGGTTATATGTCTCTATAGCTGAATCAATATCATTTCCATGAATTCCTA 1415 Query 63766 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACA 63825 | | || | ||| | |||||| || |||||||| | |||||| ||||||||||| | Sbjct 1414 CGGACACTCTCATAAGCATGTGTTGTGGTCTTTCGGCGATTTTGCCATTTATTTTCAATA 1355 Query 63826 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 63885 | || || |||||| || ||||| ||||| ||||||||| ||| || | || |||| Sbjct 1354 AATAAGAGCGTTCCAAGGTCTTAAATCCAAAGTAGTTGTATCCAAAATCCCTATCATAAA 1295 Query 63886 TAATAACCGAATT 63898 ||||| ||||| Sbjct 1294 TAATAGATGAATT 1282 Score = 293 bits (324), Expect = 3e-74 Identities = 560/815 (69%), Gaps = 13/815 (2%) Strand=Plus/Minus Query 62066 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 62125 |||||| || ||||| | ||| ||||| || ||||| || ||||| ||||| | ||||| Sbjct 3287 TGCGGGCTTAGTACGCAAATAATACATACCAGTTTTAAGCCCGAGTTTCCATGCATAAAA 3228 Query 62126 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 62185 |||||| || || || |||| | || || |||| ||| || || | || ||||| Sbjct 3227 ATGCATTGATGTGAGCTTTCCATAATTTGGTTCCGCTACATGAATGTTAAATGACTGACT 3168 Query 62186 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGCA-ATT 62243 ||| || ||||| || || | || |||||||||| || ||| |||| | | ||| Sbjct 3167 TTGGTCAATGAAAGCACCACGATCAGCAGCCATTTGAATTGATG--CTTTGATAGAGATT 3110 Query 62244 TCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAGGTT-TGTATTC--TGAAT 62299 ||||||| |||||| |||| ||| | || ||| | | |||| | | |||| ||||| Sbjct 3109 TCCCAAACAGTTTTGTAAAGCTCACGTA-TATTTGCGGGAATTCTGTCTATTTCTTGAAT 3051 Query 62300 GGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGT 62359 || |||| | || || ||||| || ||||||| ||||| | | | || || Sbjct 3050 AGAACCACGTTTAGAAATGATTTCGTTCTTCATATCATCATCCCATAGATCTATTTCCGT 2991 Query 62360 TAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGT 62419 ||| || | | | || | ||||| || ||||| |||||||| || ||||| || | Sbjct 2990 CAAATCTTTCAATAAGTGATGATTAACCACCTGGAACTCTCCAGATAAGACTCTGCGGTT 2931 Query 62420 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62479 ||||||||| || || || || | || |||||||| |||||||||||||| || || Sbjct 2930 ATAAATATTAGATGTGTATGGCTCGAAGGATTCATTATTACCCAAAATTTGAGCTGTGGA 2871 Query 62480 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62539 || || ||||| || || | |||| ||||| | || | | | || || || Sbjct 2870 CGCTGTAGGCATTGGAGCAAGTAATAGGGAGTTTCTTACGCCATGCAATTTTATCTTTTC 2811 Query 62540 TTTTAGATG-TTCCCAATTCCAAAGATCCGACGGTACAACANNNNNNNNNNNATATTGTA 62598 ||| | ||| || ||| | ||| | || | || | ||| || | Sbjct 2810 TTTCA-ATGCTTGCCAGTCCCATAAGTCGGTTGGAGTTTTATCCCACATATCATACTGGA 2752 Query 62599 GAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCT 62657 |||| || || || | | || |||| ||||||| ||||||||||| ||||| ||||| Sbjct 2751 GAATTCCTTTGCTTACTGGAC-TTCCTTCATATGTTTCATATGGTCCATCCTTTTCAGCC 2693 Query 62658 AGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGA 62717 |||| |||||| || || | || || || ||||| |||||||| || | | || | Sbjct 2692 AGTTCACAACTAGCTTCAAGAGCTCCATAGTAAATTGTTTCAAAAATTTGTTGGTTCAAC 2633 Query 62718 TCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCT 62777 ||| ||||| ||| ||| | ||| || | | ||| || || || | |||||| Sbjct 2632 AATTGAGCTTCTTTGCTTTCATAAGGAAAACGCATAATAATCAAAGCATCAGAAAATCCT 2573 Query 62778 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62837 |||||||||||||| ||||||||||||| | ||| || | | ||||||||| | ||| Sbjct 2572 TGAACACCAATACCTATAGGTCTATGTCGCAAATTCGATTTCTTAGCTTCTGGCAATGGA 2513 Query 62838 TAATAATTAATATCTATAATTTTATTGAGATTTCT 62872 |||||||| | ||| || ||||| || | |||||| Sbjct 2512 TAATAATTTACATCAATGATTTTGTTCAAATTTCT 2478 >seq116385 Length=1425 Score = 154 bits (170), Expect = 2e-32 Identities = 362/539 (67%), Gaps = 17/539 (3%) Strand=Plus/Minus Query 33585 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCG 33644 || || || ||||| || || ||||| ||| || | ||| || || || || | || Sbjct 583 GCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAACCA 524 Query 33645 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATT 33704 ||||| | || | ||| || | ||| || || | ||||| |||| ||||| || Sbjct 523 GGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACTTCCGCTGAAGAAAATG 464 Query 33705 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG------CTGTCATGT 33758 ||||| || |||||||| ||||| | |||||| || | |||| ||| || Sbjct 463 CCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCAAAGGTGGCGGATTTACTGCCA--- 407 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| ||||| || |||||||| || |||||||| | | || | || || Sbjct 406 ATCCAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAAGGTAGATTCTCGACAGCGTTG 347 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 ||||| ||| | |||| | ||| | |||| ||||| |||| ||| |||||| Sbjct 346 AAGAGGAAGTCTCTTTCCTGTGGATCGCGGATGTAAGAGTCGATTAAAATACTGTACATT 287 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 ||||| || | ||| || || || ||||| || || |||||||| | ||| || |||||| Sbjct 286 TCCGAGTGGACGTTCTCCATAGCAATCTGGAACCCATAGAAACAGCGAGCTTCAGTAATC 227 Query 33939 TGCACTT-CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 || |||| ||| ||| ||||| | || |||||||| || || ||||| || || Sbjct 226 TGGACTTCCTGGGTGAAA-CGTTCCACCAAGTTTTCATTGACAATGCCATCGGAAGCGGC 168 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAAT 34056 || || ||||| || || || || | || || || || || | || | ||| | Sbjct 167 GAAGAAAGCCAAAACGTGGGAAATGAAGTGCTTCTC-TCCGGAATTCAACTTCTCCCAGT 109 Query 34057 C--ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 34113 | ||| || || |||| ||| || || ||||| ||||| || || ||||| |||| Sbjct 108 CGGCTTG--GTCCTTGGATAGATCGACCTCCTCCACAGTCCAGAACGAAGCCTCCGCCT 52 >seq36631 Length=6711 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 28697 ATACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAA 28756 || |||| ||||||||| || || | |||||||| ||||||||||| ||||| | ||| Sbjct 1890 ATTCCCAGTTCCTTGACTTGCGTCAACGATCTCCAGTCCATGTTAGCACTTCCAATGTAA 1831 Query 28757 ATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCT 28804 | ||| |||||||| ||||||| ||||| || | |||||| ||| Sbjct 1830 AAGTGTTGATTATCAGCAATCCAAAGCTTTGTGTGCAAAACTCCACCT 1783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628862017119120