Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq93051 338 6e-88 >seq93051 Length=3786 Score = 338 bits (374), Expect = 6e-88 Identities = 584/840 (70%), Gaps = 15/840 (2%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 ||||| || || | |||| ||| | ||| | || || | || ||||||||| |||||| Sbjct 3313 TCAACAGTAAACTGAATAGCATTAGCTGCGGGCTTAGTACGCAAATAATACATACCAGTT 3254 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || ||||| | | ||||| | ||||||||||| || || ||| | || | || | Sbjct 3253 TTAAGCCCGAGTTTCCATGCATAAAAATGCATTGATGTGAGCTTTCCATAATTTGGTTCC 3194 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 ||| || || | | ||| |||||||| || || || ||||| | || || |||||| Sbjct 3193 GCTACATGAATGTTAAATGACTGACTTTGGTCAATGAAAGCACCACGATCAGCAGCCATT 3134 Query 36970 TCTAAAATACATT-TTTGA--GATATCTCCCAAACCGTTTTATATATTTGTTTTATATTA 37026 | ||| || ||||| || || |||||||| ||||| || | | |||||| Sbjct 3133 TG---AATTGATGCTTTGATAGAGATTTCCCAAACAGTTTTGTAAAGCTCACGTATATTT 3077 Query 37027 TCTGGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATG 37083 | || | |||| | ||||||||||||| | | | ||| ||||| || Sbjct 3076 GCGGGAATTCTGTCTATTTCTTGAATAGAACCACGTTTAGAAATGATTTCGTTCTTCATA 3017 Query 37084 TCATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCT 37141 |||| || ||| | || ||| || | | ||| |||||| ||| |||| || |||| Sbjct 3016 TCATCATCCCATAGAT--CTATTTCCGTCAAATCTTTCAATAAGTGATGATTAACCACCT 2959 Query 37142 GAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACT 37201 | || ||||||||||| ||||| | |||| ||||| || ||||| || | ||| | Sbjct 2958 GGAACTCTCCAGATAAGACTCTGCGGTTATAAATATTAGATGTGTATGGCTCGAAGGATT 2899 Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 ||||||||| || ||||||| ||| || || ||||||||||| || | || ||| | Sbjct 2898 CATTATTACCCAAAATTTGAGCTGTGGACGCTGTAGGCATTGGAGCAAGTAATAGGGAGT 2839 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 |||| | ||||| || || | | ||| | | | | ||| |||||||| || |||| Sbjct 2838 TTCTTACGCCATGCAATTTTATCTTTTCTTTCAATGCTTGCCAGTCCCATAAGTCGGTTG 2779 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 | | || |||||||||||| || ||||| ||||| || ||||| | | ||||| Sbjct 2778 GAGTTTTATCCCACATATCATACTGGAGAATTCCTTTGCTTACTGGACTTCCTTCATATG 2719 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 | ||||| ||||| | ||| ||| ||||| ||||||| ||| || || |||| || | Sbjct 2718 TTTCATATGGTCCATCCTTTTCAGCCAGTTCACAACTAGCTTCAAGAGCTCCATAGTAAA 2659 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 ||||||| ||||||||| || || | || ||||||| ||| || | | | | | || Sbjct 2658 TTGTTTCAAAAATTTGTTGGTTCAACAATTGAGCTTCTTTGCTTTCATAAGGAAAACGCA 2599 Query 37502 ATAATA-TAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTA 37560 ||||| | || |||||| || || |||||||| |||||||| ||||||||| | | Sbjct 2598 -TAATAATCAAAGCATCAGAAAATCCTTGAACACCAATACCTATAGGTCTATGTCGCAAA 2540 Query 37561 TTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTT 37620 || ||| | | |||| || |||||||||||| | ||| || ||||| || | |||| Sbjct 2539 TTCGATTTCTTAGCTTCTGGCAATGGATAATAATTTACATCAATGATTTTGTTCAAATTT 2480 Score = 268 bits (296), Expect = 9e-67 Identities = 640/956 (67%), Gaps = 20/956 (2%) Strand=Plus/Minus Query 37688 TCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATA- 37746 |||| | || ||| ||| ||| || || || | |||||| || || ||| | || Sbjct 2242 TCAATGCTATGGATGCTAAATTGCAGACTGCGATTTCATC--CGGAGCTGAATATTCTAC 2185 Query 37747 -ATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTT 37805 || ||||| || ||||| || || | || || || | || |||||| ||| | Sbjct 2184 TATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCT 2125 Query 37806 ATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAAT 37865 |||||||| ||||||||||| || || || || || ||| | ||| | |||||| || Sbjct 2124 ATTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTCGATTAT 2065 Query 37866 AGATTTCCATAAACTTCTTG--CTTTAACGATCGCTTTAAtttttttCTTTGTTTCGTAT 37923 | ||| || || ||| |||||| | ||| |||| || | |||||| Sbjct 2064 GGCAAACCACAA--TTGTTGAGCTTTAATTTTACGGTTAGCTTTTCCCTCCTTCTCGTAT 2007 Query 37924 TCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCAT 37983 | || || | || | ||| || | ||||| ||||| || |||||||||| Sbjct 2006 TTTACGTAGAGATTCTCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACATTTATGG 1947 Query 37984 GGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACC 38043 |||||||| | ||||| || ||||| ||||||||||| ||| |||||||| || | | Sbjct 1946 GGACACATCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATCGGGAATC 1887 Query 38044 CATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTT-AA 38102 ||||| ||| ||||| |||| | | || || || || ||| ||| |||||| || Sbjct 1886 CATAAAGCATAAAATAGATCTCTTGCTCGGAGCTCATCTTTACCTGTATT-TTTCTTCAA 1828 Query 38103 GCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGG 38162 | || ||| || || ||||||| |||||||| |||| |||||| | | ||||| || Sbjct 1827 GTCTAAAAATTCAAAAATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAGCTCCGGG 1768 Query 38163 TCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGG 38222 |||||||| || ||||||| | |||| | | |||||| | | ||| | |||||| Sbjct 1767 TCTTTTATTTCCACCCTGATCCACATATTTTGCAACGTTATTGAACACTCTAAGCATAGG 1708 Query 38223 TACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTAT--A 38280 ||||| ||| ||||| |||| || | || | |||| ||| || ||||| || || | Sbjct 1707 TACTAAACCGTTAGAAGTGCCATTAGTTCCTGCTATAGTAGTGCCTTTAGCACGAATGCA 1648 Query 38281 TTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAAC 38340 | | || | | || ||||| || || || || || | |||||||||| | Sbjct 1647 ATGCACATTTATA--CCAATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTTCGACT 1590 Query 38341 GTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATT 38400 | | ||| || ||||| || |||| |||| || | |||||| || | | Sbjct 1589 GATTTAAAGATTCCTTCAATTGAGTCAGAGCACATTGTTAAGAGAAAACAGGATGATAGT 1530 Query 38401 TGA-GGCAA--TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTT 38457 ||| ||| | || || | | ||| || | ||||| || ||||| || || || || Sbjct 1529 TGAGGGCGAGGTGTAGCTGCCGCG---AACAGGGTAGGTGAAGCATGGATAAAATATCTT 1473 Query 38458 TCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGA 38517 || || ||| |||||||| ||||| | ||| |||||| || ||||| |||| Sbjct 1472 TCTGATAAAAGGTTATATGTCTCTATAGCTGAATCAATATCATTTCCATGAATTCCTACG 1413 Query 38518 GATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGA 38577 || || ||||| ||||| |||||||||||||| ||||| ||| ||| | || | Sbjct 1412 GACACTCTCATAAGCATGTGTTGTGGTCTTTCGGCGATTTTGCCATTTATTTTCAATAAA 1353 Query 38578 TACGATTTTTCTAATGTTTTTATTCCAAAATAACTATATGAATAATCTCTATCGTA 38633 || || ||| || || || | |||||| || | ||| | |||| ||||| || Sbjct 1352 TAAGAGCGTTCCAAGGTCTTAAATCCAAAGTAGTTGTATCCAAAATCCCTATCATA 1297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 467813936603760