Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq93051 374 1e-98 seq116385 136 5e-27 >seq93051 Length=3786 Score = 374 bits (414), Expect = 1e-98 Identities = 670/965 (69%), Gaps = 20/965 (2%) Strand=Plus/Minus Query 65729 GTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 65788 ||||||||| | ||||| | ||| || || || | |||| | | | | ||||| || Sbjct 2244 GTTCAATGCTATGGATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAATATTCTAC 2185 Query 65789 TATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 65848 ||| || ||||||||||| || || || ||||| |||| |||||||||||||| || | Sbjct 2184 TATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCT 2125 Query 65849 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 65908 ||||| ||||| ||||| | ||| |||| ||||||||||||| || || || || || Sbjct 2124 ATTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTCGATTAT 2065 Query 65909 CGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCTTTTCTCTTTCGTATA 65967 || ||| | | |||| || ||| || | || | | || | || | |||||| Sbjct 2064 GGCAAACCACAATTGTTGAGCTTTAATTTTACGGTTAGCTTTTCCCTCCT-TCTCGTATT 2006 Query 65968 GT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 66025 | ||| | | || || ||||| ||||||||||||| | | || ||||||| || Sbjct 2005 TTACGTAGAGATTC--TCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACATTTATG 1948 Query 66026 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 66085 ||||||||||| ||||| || | ||| | | || |||||||| || | ||| ||||| Sbjct 1947 GGGACACATCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATCGGGAAT 1888 Query 66086 CCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 66145 ||| | ||| ||||| |||||| | || | || || || |||||||| || || | Sbjct 1887 CCATAAAGCATAAAATAGATCTCTTGCTCGGAGCTCATCTTTACCTGTATTTTTCTTCAA 1828 Query 66146 ATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 66205 || | || | | ||||||| ||||||| || || || || || || | | |||| || Sbjct 1827 GTCTAAAAATTCAAAAATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAGCTCCGGG 1768 Query 66206 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 66265 | ||| ||||| |||||||| | ||| | || |||||| | ||||| | ||| || Sbjct 1767 TCTTTTATTTCCACCCTGATCCACATATTTTGCAACGTTATTGAACACTCTAAGCATAGG 1708 Query 66266 AATAATACCATTGGATGTACCATTGGTCCCGGAGATA-TAGCTTCCACTTGCACGAAT-- 66322 | | ||| || || || ||||| || || | ||| ||| | || | |||||||| Sbjct 1707 TACTAAACCGTTAGAAGTGCCATTAGTTCCTGCTATAGTAG-TGCCTTTAGCACGAATGC 1649 Query 66323 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 66382 | | | ||| || ||| ||||| || || ||||| || | ||||||| ||| | Sbjct 1648 AATGCACATT--TATACCAATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTTCGAC 1591 Query 66383 CGTATCATAGATGCCCTCTATACTATCA-TCCATCATGTTAAGTAGAAAACAGCTAGACA 66441 | | | |||| || || || ||| || ||||||| ||||||||| || | Sbjct 1590 TGATTTAAAGATTCCTTCAATTGAGTCAGAGCACATTGTTAAG-AGAAAACAGGATGATA 1532 Query 66442 TTT---GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 66498 || || || | ||| | |||| || | |||||| ||||| || |||| || Sbjct 1531 GTTGAGGGCGAGGTGTAGCTGCCGC---GAACAGGGTAGGTGAAGCATGGATAAAATATC 1475 Query 66499 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 66558 |||| || | || || || ||||| |||||||| || ||||| | ||||||||||| Sbjct 1474 TTTCTGATAAAAGGTTATATGTCTCTATAGCTGAATCAATATCATTTCCATGAATTCCTA 1415 Query 66559 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 66618 | | || | ||| | |||||| || |||||||| |||| ||| ||||||||||| | Sbjct 1414 CGGACACTCTCATAAGCATGTGTTGTGGTCTTTCGGCGATTTTGCCATTTATTTTCAATA 1355 Query 66619 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 66678 | || || |||||| || ||||| ||||| ||||||||| ||| || | || |||| Sbjct 1354 AATAAGAGCGTTCCAAGGTCTTAAATCCAAAGTAGTTGTATCCAAAATCCCTATCATAAA 1295 Query 66679 TAATA 66683 ||||| Sbjct 1294 TAATA 1290 Score = 284 bits (314), Expect = 2e-71 Identities = 555/814 (68%), Gaps = 11/814 (1%) Strand=Plus/Minus Query 64859 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 64918 |||||| || ||||| | ||| ||||| || ||||| || ||||| ||||| | ||||| Sbjct 3287 TGCGGGCTTAGTACGCAAATAATACATACCAGTTTTAAGCCCGAGTTTCCATGCATAAAA 3228 Query 64919 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 64978 |||||| || || || |||| | || || |||| ||| || || | || ||||| Sbjct 3227 ATGCATTGATGTGAGCTTTCCATAATTTGGTTCCGCTACATGAATGTTAAATGACTGACT 3168 Query 64979 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGGA-ATT 65036 ||| || ||||| || || | || |||||||||| || ||| |||| | || ||| Sbjct 3167 TTGGTCAATGAAAGCACCACGATCAGCAGCCATTTGAATTGATG--CTTTGATAGAGATT 3110 Query 65037 TCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAGGTT-TGTATTC--TGAAT 65092 ||||||| |||||| |||| ||| | || ||| | | |||| | | |||| ||||| Sbjct 3109 TCCCAAACAGTTTTGTAAAGCTCACGTA-TATTTGCGGGAATTCTGTCTATTTCTTGAAT 3051 Query 65093 GGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGT 65152 || |||| | | || || ||||| || ||||||| ||||| | | | || || Sbjct 3050 AGAACCACGTTTAGAAATGATTTCGTTCTTCATATCATCATCCCATAGATCTATTTCCGT 2991 Query 65153 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 65212 ||| || | | | || ||||||| || || || |||||||| || ||||| || | Sbjct 2990 CAAATCTTTCAATAAGTGATGATTAACCACCTGGAACTCTCCAGATAAGACTCTGCGGTT 2931 Query 65213 GTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGA 65272 ||||||||| || || || || | || |||||||| |||||||||||||| || || Sbjct 2930 ATAAATATTAGATGTGTATGGCTCGAAGGATTCATTATTACCCAAAATTTGAGCTGTGGA 2871 Query 65273 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 65332 || || ||||| || || | |||| ||||| | || | | | || || || Sbjct 2870 CGCTGTAGGCATTGGAGCAAGTAATAGGGAGTTTCTTACGCCATGCAATTTTATCTTTTC 2811 Query 65333 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 65392 ||| | | || ||| | ||| | || | || || || Sbjct 2810 TTTCAATGCTTGCCAGTCCCATAAGTCGGTTGGAGTTTTATCCCACATATCATACTGGAG 2751 Query 65393 AATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTA 65451 ||| || || || | | || |||| ||||||| || |||||||| ||||| ||||| | Sbjct 2750 AATTCCTTTGCTTACTGGAC-TTCCTTCATATGTTTCATATGGTCCATCCTTTTCAGCCA 2692 Query 65452 GTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT 65511 |||||||||| || || | || || || ||||| ||||| || || | | || | Sbjct 2691 GTTCACAACTAGCTTCAAGAGCTCCATAGTAAATTGTTTCAAAAATTTGTTGGTTCAACA 2632 Query 65512 CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTT 65571 ||| ||||| ||| ||| | ||| || | | ||| || || || | ||||||| Sbjct 2631 ATTGAGCTTCTTTGCTTTCATAAGGAAAACGCATAATAATCAAAGCATCAGAAAATCCTT 2572 Query 65572 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 65631 ||||||||||||| ||||||||||||| | ||| || | | ||||||||| | |||| Sbjct 2571 GAACACCAATACCTATAGGTCTATGTCGCAAATTCGATTTCTTAGCTTCTGGCAATGGAT 2512 Query 65632 AATAATTAATATCTATAATTTTATTGAGATTTCT 65665 ||||||| | ||| || ||||| || | |||||| Sbjct 2511 AATAATTTACATCAATGATTTTGTTCAAATTTCT 2478 >seq116385 Length=1425 Score = 136 bits (150), Expect = 5e-27 Identities = 358/539 (66%), Gaps = 17/539 (3%) Strand=Plus/Minus Query 36161 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 36220 || || || ||||| || || ||||| ||| || | ||| ||||| || || | || Sbjct 583 GCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAACCA 524 Query 36221 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 36280 ||||| | || | ||| || | ||| || || | || || ||| |||||||| Sbjct 523 GGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACTTCCGCTGAAGAAAATG 464 Query 36281 CCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC------ACTGTCATGT 36334 ||||| || || ||||| ||||| | |||||| || | ||| |||| || Sbjct 463 CCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCAAAGGTGGCGGATTTACTGCCA--- 407 Query 36335 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTA 36394 ||||| ||||| || |||||||| || |||||||| | |||| | ||| || Sbjct 406 ATCCAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAAGGTAGATTCTCGACAGCGTTG 347 Query 36395 AAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATT 36454 ||||| ||| | |||| | ||| | || | || || |||| ||| |||||| Sbjct 346 AAGAGGAAGTCTCTTTCCTGTGGATCGCGGATGTAAGAGTCGATTAAAATACTGTACATT 287 Query 36455 TCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 36514 ||||| || | ||| || || || || || || || |||||||| | ||| || |||||| Sbjct 286 TCCGAGTGGACGTTCTCCATAGCAATCTGGAACCCATAGAAACAGCGAGCTTCAGTAATC 227 Query 36515 TGTACTT-CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 36573 || |||| ||| ||| ||||| | || |||||||| || || || || || || Sbjct 226 TGGACTTCCTGGGTGAAA-CGTTCCACCAAGTTTTCATTGACAATGCCATCGGAAGCGGC 168 Query 36574 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTATTCCAAT 36632 || || ||||| || || || || | || || | || || | || | ||| | Sbjct 167 GAAGAAAGCCAAAACGTGGGAAATGAAGTGCTTCTC-TCCGGAATTCAACTTCTCCCAGT 109 Query 36633 C--ATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 36689 | ||| || || |||| ||| || || ||||| ||||| || || ||||| |||| Sbjct 108 CGGCTTG--GTCCTTGGATAGATCGACCTCCTCCACAGTCCAGAACGAAGCCTCCGCCT 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657174195546360