Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq93051 105 7e-18 seq26001 98.7 1e-15 seq30215 96.9 3e-15 >seq93051 Length=3786 Score = 105 bits (116), Expect = 7e-18 Identities = 250/374 (67%), Gaps = 8/374 (2%) Strand=Plus/Minus Query 153618 ATATATTTGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAA 153677 ||||||| ||| | || || || || || ||||| || || |||| || || || || Sbjct 2252 ATATATTGGTTCAATGCTATGGATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAA 2193 Query 153678 TATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTG 153737 |||| ||||||||| | || | ||||||||||||||| || || |||||| Sbjct 2192 TATTCTACTATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTA 2133 Query 153738 CTTTTGCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATT 153797 ||||| | |||||||| || || |||| ||||||||| || || ||||| |||| Sbjct 2132 CTTTTCCTATTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGAC 2073 Query 153798 TCTATAATAGTACGCATCAAT--GTGACCGCGGGCATTTGATCGCGAAACTGGCCCTTGT 153855 || || || | | | |||| ||| || |||| | | | | |||| | Sbjct 2072 TCGATTATGGCAAACCACAATTGTTGA--GCTTTAATTTTACGGTTAGCTTTTCCCTCCT 2015 Query 153856 CTTCGTAGTGTTTGTACCAGTATTCAAACTC--ATCACCAAACGTATTGTTAAGCTCGGG 153913 ||||| | | ||| | |||||||| || |||||| | ||| ||| | || Sbjct 2014 TCTCGTATTTTACGTAGAGATTCTCAAACTCCTCTCCCCAAACATCATGT--AGCCCTGG 1957 Query 153914 ACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATAT 153973 ||||| | ||||||||||| |||||| ||| ||| ||||| ||| |||| Sbjct 1956 ACATTTATGGGGACACATCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAA 1897 Query 153974 ATCGGGAACCCATA 153987 |||||||| ||||| Sbjct 1896 ATCGGGAATCCATA 1883 >seq26001 Length=10617 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | ||||| |||| |||||||||||||| || || |||||| Sbjct 8788 CCACCACGAAGACGAAGCACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAA 8729 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| || || || ||||| |||||| | ||||||||| ||||| Sbjct 8728 AGAGTACGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGA 8669 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || |||||||| ||| | || | |||| | | || | || || | || || || Sbjct 8668 ATTCCCTCTTTGTC-TTGAATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTAC 8610 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | || || || || | ||||||||||| |||||||| Sbjct 8609 TTCTAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGAAAATTTGCAT 8562 >seq30215 Length=1837 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || || |||| || ||||| |||||||| || ||||| || ||| | |||||| Sbjct 1729 ACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATGTACGACCGTCTTCC 1670 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 | || || ||||| |||||| ||| || || || ||||| || ||||||||||| || Sbjct 1669 AATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTC-TTG 1611 Query 139676 ATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 | |||| | || | | || | || |||| ||||| ||||| | ||| | ||||| Sbjct 1610 AATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCTT 1551 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || ||||| || || ||||| || ||||| Sbjct 1550 ACCAGTCAAAGTCTTGACGAAAATCTGCAT 1521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495311353096800