Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq93051 405 7e-108 seq116385 141 1e-28 >seq93051 Length=3786 Score = 405 bits (448), Expect = 7e-108 Identities = 677/966 (70%), Gaps = 22/966 (2%) Strand=Plus/Minus Query 79608 GTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 79667 |||||| || | ||||| | ||| || || || | |||| | | | | ||||| || Sbjct 2244 GTTCAATGCTATGGATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAATATTCTAC 2185 Query 79668 TATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTT 79727 |||||| ||||| || || || || || ||||| |||| |||||||||||||| || | Sbjct 2184 TATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCT 2125 Query 79728 GTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 79787 ||||| ||||| ||||| | ||| | || ||||||||||||| || || || || || Sbjct 2124 ATTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTCGATTAT 2065 Query 79788 CGCTTTCCAGACGACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTC--GTAT 79845 || ||| | | |||| || ||| || || | || || ||| ||| |||| Sbjct 2064 GGCAAACCACAATTGTTGAGCTTTAATTTTACGGTT--AGCTTTTCCCTCCTTCTCGTAT 2007 Query 79846 TGT--GTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGT 79903 | | ||| | | || || ||||| |||||||||||||| | || || ||||||| | Sbjct 2006 TTTACGTAGAGATTC--TCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACATTTAT 1949 Query 79904 CAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAA 79963 ||||||||||| ||||| || ||||| | | ||| |||||||| || | ||| |||| Sbjct 1948 GGGGACACATCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATCGGGAA 1889 Query 79964 TCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 80023 |||| | ||| |||||||||||| | || |||| || || |||||||| || || | Sbjct 1888 TCCATAAAGCATAAAATAGATCTCTTGCTCGGAGCTCATCTTTACCTGTATTTTTCTTCA 1829 Query 80024 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 80083 || | || | | ||||||||||||||| || || || || || || | | |||| | Sbjct 1828 AGTCTAAAAATTCAAAAATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAGCTCCGG 1769 Query 80084 GTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 80143 ||| ||| ||||| |||||||| | ||| | || |||||| | ||||| | ||| | Sbjct 1768 GTCTTTTATTTCCACCCTGATCCACATATTTTGCAACGTTATTGAACACTCTAAGCATAG 1709 Query 80144 GAATAATACCATTGGATGTACCATTGGTCCCGGAGATA-TAGCTTCCACTGGCACGAAT- 80201 | | | ||| || || || ||||| || || | ||| ||| | || | |||||||| Sbjct 1708 GTACTAAACCGTTAGAAGTGCCATTAGTTCCTGCTATAGTAG-TGCCTTTAGCACGAATG 1650 Query 80202 -ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 80260 | | | ||| || ||| ||||| || || ||||| || | ||||||| ||| | Sbjct 1649 CAATGCACATT--TATACCAATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTTCGA 1592 Query 80261 ACGTATCATAGATGCCCTCTATGCTATCATCAATCA-TGTTAAGTAGAAAACAGCTAGAC 80319 | | | |||| || || || ||| || ||||||| ||||||||| || Sbjct 1591 CTGATTTAAAGATTCCTTCAATTGAGTCAGAGCACATTGTTAAG-AGAAAACAGGATGAT 1533 Query 80320 ATTT---GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 80376 | || || || | ||| | |||| || | |||||| ||||| || |||| || Sbjct 1532 AGTTGAGGGCGAGGTGTAGCTGCCGC---GAACAGGGTAGGTGAAGCATGGATAAAATAT 1476 Query 80377 TTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCT 80436 |||| || | || || || ||||| |||||||| || ||||| | |||||||||| Sbjct 1475 CTTTCTGATAAAAGGTTATATGTCTCTATAGCTGAATCAATATCATTTCCATGAATTCCT 1416 Query 80437 ACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 80496 || | || | ||| | |||||| || |||||||| |||| ||| |||||||||||| Sbjct 1415 ACGGACACTCTCATAAGCATGTGTTGTGGTCTTTCGGCGATTTTGCCATTTATTTTCAAT 1356 Query 80497 AAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 80556 || ||||| |||||| || ||||| ||||| ||||||||| ||| || | || ||| Sbjct 1355 AAATAAGAGCGTTCCAAGGTCTTAAATCCAAAGTAGTTGTATCCAAAATCCCTATCATAA 1296 Query 80557 ATAATA 80562 |||||| Sbjct 1295 ATAATA 1290 Score = 329 bits (364), Expect = 5e-85 Identities = 566/813 (70%), Gaps = 9/813 (1%) Strand=Plus/Minus Query 78738 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAA 78797 |||||| || ||||| | ||| ||||| || ||||| || ||||| ||||| | || || Sbjct 3287 TGCGGGCTTAGTACGCAAATAATACATACCAGTTTTAAGCCCGAGTTTCCATGCATAAAA 3228 Query 78798 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 78857 |||||| || || || |||| | || || |||| ||| || || | || ||||| Sbjct 3227 ATGCATTGATGTGAGCTTTCCATAATTTGGTTCCGCTACATGAATGTTAAATGACTGACT 3168 Query 78858 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGGA-ATT 78915 ||| || ||||| || || | || |||||||||| || ||| |||| | || ||| Sbjct 3167 TTGGTCAATGAAAGCACCACGATCAGCAGCCATTTGAATTGATG--CTTTGATAGAGATT 3110 Query 78916 TCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAGGTT-TGTATTC--TGAAT 78971 ||||||| |||||| |||| ||| | || ||| | | |||| | | |||| ||||| Sbjct 3109 TCCCAAACAGTTTTGTAAAGCTCACGTA-TATTTGCGGGAATTCTGTCTATTTCTTGAAT 3051 Query 78972 GGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGT 79031 || |||| | | || || ||||| || || |||| ||||| | | | || || Sbjct 3050 AGAACCACGTTTAGAAATGATTTCGTTCTTCATATCATCATCCCATAGATCTATTTCCGT 2991 Query 79032 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 79091 ||| || | | | || ||||||| || || || |||||||| || ||||| || | Sbjct 2990 CAAATCTTTCAATAAGTGATGATTAACCACCTGGAACTCTCCAGATAAGACTCTGCGGTT 2931 Query 79092 GTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGA 79151 ||||||||| || ||||| || | ||||||||||| |||||||||||||| || || Sbjct 2930 ATAAATATTAGATGTGTATGGCTCGAAGGATTCATTATTACCCAAAATTTGAGCTGTGGA 2871 Query 79152 TGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATTTTATC 79211 || || ||||| || || | |||| ||||| | || | || | || || || Sbjct 2870 CGCTGTAGGCATTGGAGCAAGTAATAGGGAGTTTCTTACGCCATGCAATTTTATCTTTTC 2811 Query 79212 TTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAG 79271 ||| | | || ||| ||||| | || | || || ||| | |||||| || || Sbjct 2810 TTTCAATGCTTGCCAGTCCCATAAGTCGGTTGGAGTTTTATCCCACATATCATACTGGAG 2751 Query 79272 AATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAA 79331 ||| || || || | |||| ||||||||||| ||||| |||||||| || | Sbjct 2750 AATTCCTTTGCTTACTGGACTTCCTTCATATGTTTCATATGGTCCATCCTTTTCAGCCAG 2691 Query 79332 TTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATC 79391 ||||||||| || || | ||||| || ||||| ||||| ||||| | | || | Sbjct 2690 TTCACAACTAGCTTCAAGAGCTCCATAGTAAATTGTTTCAAAAATTTGTTGGTTCAACAA 2631 Query 79392 TTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTG 79451 ||| |||||| ||| ||| | ||| || | | ||| || || || | |||||||| Sbjct 2630 TTGAGCTTCTTTGCTTTCATAAGGAAAACGCATAATAATCAAAGCATCAGAAAATCCTTG 2571 Query 79452 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATA 79511 |||||||||||| ||||||||||||| | ||| || | | ||||||||| | ||||| Sbjct 2570 AACACCAATACCTATAGGTCTATGTCGCAAATTCGATTTCTTAGCTTCTGGCAATGGATA 2511 Query 79512 ATAATTAATATCTATAATTTTATTGAGATTCCT 79544 |||||| | ||| || ||||| || | ||| || Sbjct 2510 ATAATTTACATCAATGATTTTGTTCAAATTTCT 2478 >seq116385 Length=1425 Score = 141 bits (156), Expect = 1e-28 Identities = 357/538 (66%), Gaps = 15/538 (3%) Strand=Plus/Minus Query 49963 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 50022 || || || ||||| || || ||||| ||| || ||||| ||||| || || | || Sbjct 583 GCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAACCA 524 Query 50023 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATT 50082 ||||| | || | ||| || | ||| || || | || || || ||||| || Sbjct 523 GGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACTTCCGCTGAAGAAAATG 464 Query 50083 CCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG------CTGTCATGT 50136 ||||| || || ||||| |||| | |||||| || | ||||| ||| || Sbjct 463 CCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCAAAGGTGGCGGATTTACTGCCA--- 407 Query 50137 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 50196 ||||| ||||| || |||||||| || |||||||| | | || | || || Sbjct 406 ATCCAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAAGGTAGATTCTCGACAGCGTTG 347 Query 50197 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 50256 ||||| ||| | |||| | ||| | |||| ||||| |||| ||| |||||| Sbjct 346 AAGAGGAAGTCTCTTTCCTGTGGATCGCGGATGTAAGAGTCGATTAAAATACTGTACATT 287 Query 50257 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 50316 ||||| || | ||| || || || ||||| || || |||||||| | ||| || |||||| Sbjct 286 TCCGAGTGGACGTTCTCCATAGCAATCTGGAACCCATAGAAACAGCGAGCTTCAGTAATC 227 Query 50317 TGCACTT-CTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 || |||| ||| ||| ||||| | || |||||||| || || || || || || Sbjct 226 TGGACTTCCTGGGTGAAA-CGTTCCACCAAGTTTTCATTGACAATGCCATCGGAAGCGGC 168 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATC 50435 || || ||||| || || || || || || || || | | || | ||| || Sbjct 167 GAAGAAAGCCAAAACGTGGGAAATGAAGTGCTTCTCTCCGGAATTCAACTTCTCCCAGTC 108 Query 50436 --ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 ||| || || |||| ||| || || ||||| ||||| || || ||||| |||| Sbjct 107 GGCTTG--GTCCTTGGATAGATCGACCTCCTCCACAGTCCAGAACGAAGCCTCCGCCT 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717179015641560