Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq93051 390 2e-103 seq36631 87.8 2e-12 >seq93051 Length=3786 Score = 390 bits (432), Expect = 2e-103 Identities = 684/983 (70%), Gaps = 22/983 (2%) Strand=Plus/Minus Query 71691 GTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTAT 71750 |||||| || | ||||| | ||| || || || | |||| | | | | ||||| || Sbjct 2244 GTTCAATGCTATGGATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAATATTCTAC 2185 Query 71751 AATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTT 71810 ||||| ||||||||||| || || || ||||| |||| |||||||||||||| || | Sbjct 2184 TATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCT 2125 Query 71811 GTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAAT 71870 ||||| ||||| ||||| | || | || ||||||||||||| || || || || || Sbjct 2124 ATTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTCGATTAT 2065 Query 71871 CGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTC--GTAT 71928 || ||| | | |||| || ||| || || | || || ||| ||| |||| Sbjct 2064 GGCAAACCACAATTGTTGAGCTTTAATTTTACGGTT--AGCTTTTCCCTCCTTCTCGTAT 2007 Query 71929 TGT--GTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCAT 71986 | | ||| | | || || ||||| ||||||||| ||| | || || ||||||| || Sbjct 2006 TTTACGTAGAGATTC--TCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACATTTAT 1949 Query 71987 TCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAA 72046 ||||||||||||||||| || ||||| | | ||| |||||||| || | ||| |||| Sbjct 1948 GGGGACACATCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATCGGGAA 1889 Query 72047 TCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 72106 |||| | ||| |||||||||||| | || |||| || || |||||||| || || | Sbjct 1888 TCCATAAAGCATAAAATAGATCTCTTGCTCGGAGCTCATCTTTACCTGTATTTTTCTTCA 1829 Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 || | || | | ||||||||||||||| || || || || || || | | |||| | Sbjct 1828 AGTCTAAAAATTCAAAAATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAGCTCCGG 1769 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 | | ||| ||||| |||||||| | ||| | || |||||| | ||||| | ||| | Sbjct 1768 GTCTTTTATTTCCACCCTGATCCACATATTTTGCAACGTTATTGAACACTCTAAGCATAG 1709 Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATA-TAGCTTCCACTGGCACGAAT- 72284 | | | ||| || || | ||||| || || | ||| ||| | || | |||||||| Sbjct 1708 GTACTAAACCGTTAGAAGTGCCATTAGTTCCTGCTATAGTAG-TGCCTTTAGCACGAATG 1650 Query 72285 -ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 72343 | ||| ||| || ||| ||||| || || ||||| || | ||||||| ||| | Sbjct 1649 CAATGCACATT--TATACCAATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTTCGA 1592 Query 72344 ACGTATCATAGATGCCCTCTATACTATCA-TCCATCATGTTAAGTAGAAAACAGCTAGAC 72402 | | | |||| || || || ||| || ||||||| ||||||||| || Sbjct 1591 CTGATTTAAAGATTCCTTCAATTGAGTCAGAGCACATTGTTAAG-AGAAAACAGGATGAT 1533 Query 72403 ATTT---GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCAT 72459 | || || || | ||| | |||| || | |||||| ||||| || |||| || Sbjct 1532 AGTTGAGGGCGAGGTGTAGCTGCCGC---GAACAGGGTAGGTGAAGCATGGATAAAATAT 1476 Query 72460 TTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCT 72519 |||| || | || || || ||||| |||||||| || ||||| | ||| |||||| Sbjct 1475 CTTTCTGATAAAAGGTTATATGTCTCTATAGCTGAATCAATATCATTTCCATGAATTCCT 1416 Query 72520 ACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAAC 72579 || | || | ||| | ||| || || |||||||| |||| ||| |||||||||||| Sbjct 1415 ACGGACACTCTCATAAGCATGTGTTGTGGTCTTTCGGCGATTTTGCCATTTATTTTCAAT 1356 Query 72580 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAA 72639 || || || |||||| || ||||| ||||| ||||||||| ||| || | || ||| Sbjct 1355 AAATAAGAGCGTTCCAAGGTCTTAAATCCAAAGTAGTTGTATCCAAAATCCCTATCATAA 1296 Query 72640 ATAATAACCGAATTGAGTTTATC 72662 |||||| ||||| | | |||| Sbjct 1295 ATAATAGATGAATTCAATCTATC 1273 Score = 286 bits (316), Expect = 5e-72 Identities = 564/833 (68%), Gaps = 9/833 (1%) Strand=Plus/Minus Query 70801 GTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGA 70860 ||||||||||| | | | ||||| || ||||| | ||| ||||| || ||||| || Sbjct 3307 GTAAACTGAATAGCATTAGCTGCGGGCTTAGTACGCAAATAATACATACCAGTTTTAAGC 3248 Query 70861 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATG 70920 ||||| ||||| | ||||||||||| || || || ||| | || || |||| Sbjct 3247 CCGAGTTTCCATGCATAAAAATGCATTGATGTGAGCTTTCCATAATTTGGTTCCGCTACA 3188 Query 70921 TGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT- 70979 ||||| || | ||||||||||| || ||||| || || | || |||||||||| || Sbjct 3187 TGAATGTTAAATGACTGACTTTGGTCAATGAAAGCACCACGATCAGCAGCCATTTGAATT 3128 Query 70980 GATCGTCTTTTGTGGA-ATTTCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGA 71037 ||| |||| | || |||||||||| |||||| |||| ||| | || ||| | | ||| Sbjct 3127 GATG--CTTTGATAGAGATTTCCCAAACAGTTTTGTAAAGCTCACGTA-TATTTGCGGGA 3071 Query 71038 AGGTT-TGTATTC--TGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCA 71094 | | | |||| ||||| || |||| | | ||| || || || || || ||| Sbjct 3070 ATTCTGTCTATTTCTTGAATAGAACCACGTTTAGAAATGATTTCGTTCTTCATATCATCA 3011 Query 71095 TTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCT 71154 | ||||| | | | || || ||| || | | | ||| ||||||| || || || ||| Sbjct 3010 TCCCATAGATCTATTTCCGTCAAATCTTTCAATAAGTGATGATTAACCACCTGGAACTCT 2951 Query 71155 CCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTT 71214 ||||| || ||||| || | ||||||||| || || || || | || |||||||| Sbjct 2950 CCAGATAAGACTCTGCGGTTATAAATATTAGATGTGTATGGCTCGAAGGATTCATTATTA 2891 Query 71215 CCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGA 71274 |||||||||||||| || || || || ||||| || || | ||||| ||||| | Sbjct 2890 CCCAAAATTTGAGCTGTGGACGCTGTAGGCATTGGAGCAAGTAATAGGGAGTTTCTTACG 2831 Query 71275 CCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACAACN 71334 ||||| || || || ||||| | | || ||| | ||| | || | ||| Sbjct 2830 CCATGCAATTTTATCTTTTCTTTCAATGCTTGCCAGTCCCATAAGTCGGTTGGAGTTTTA 2771 Query 71335 NNNNNNNNNNNNNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTAT 71394 || || || || | |||| ||||||| || ||| Sbjct 2770 TCCCACATATCATACTGGAGAATTCCTTTGCTTACTGGACTTCCTTCATATGTTTCATAT 2711 Query 71395 GGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCG 71454 ||||| || ||||| || ||||||||||| || || | |||||||| ||||| ||||| Sbjct 2710 GGTCCATCCTTTTCAGCCAGTTCACAACTAGCTTCAAGAGCTCCATAGTAAATTGTTTCA 2651 Query 71455 AAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATA 71514 ||||| | | || | ||| ||||| ||| ||| | ||| || | | ||| Sbjct 2650 AAAATTTGTTGGTTCAACAATTGAGCTTCTTTGCTTTCATAAGGAAAACGCATAATAATC 2591 Query 71515 AACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATT 71574 || || || | ||||||||||| |||||||| |||||||| |||| | ||| || | Sbjct 2590 AAAGCATCAGAAAATCCTTGAACACCAATACCTATAGGTCTATGTCGCAAATTCGATTTC 2531 Query 71575 TCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT 71627 | ||||||||| | ||||||||||| | ||| || ||||| || | |||||| Sbjct 2530 TTAGCTTCTGGCAATGGATAATAATTTACATCAATGATTTTGTTCAAATTTCT 2478 >seq36631 Length=6711 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 36474 ATACCCAATTCCTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAA 36533 || |||| ||||||||| || || | |||||||| ||||||||||| ||||| | ||| Sbjct 1890 ATTCCCAGTTCCTTGACTTGCGTCAACGATCTCCAGTCCATGTTAGCACTTCCAATGTAA 1831 Query 36534 ATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCT 36581 | ||| |||||||| ||||||| ||||| || | |||||| ||| Sbjct 1830 AAGTGTTGATTATCAGCAATCCAAAGCTTTGTGTGCAAAACTCCACCT 1783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670120922438040