Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq26001 116 4e-21 seq93051 93.3 4e-14 seq30215 84.2 2e-11 >seq26001 Length=10617 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | |||||||||| ||||| |||||||| || ||||||||| Sbjct 8788 CCACCACGAAGACGAAGCACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAA 8729 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | |||||| ||||| || ||||| |||||| | ||||||||| ||||| Sbjct 8728 AGAGTACGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGA 8669 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || |||||||| ||| || ||| | | || | || |||| ||||||||| Sbjct 8668 ATTCCCTCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTACT 8609 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || || || || | ||||||||||| |||||||| Sbjct 8608 TCTAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGAAAATTTGCAT 8562 >seq93051 Length=3786 Score = 93.3 bits (102), Expect = 4e-14 Identities = 255/389 (66%), Gaps = 30/389 (8%) Strand=Plus/Minus Query 157040 ATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAA 157099 ||||||| || | || || || |||| ||| || || || |||| || || || || Sbjct 2252 ATATATTGGTTCAATGCTATGGATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAA 2193 Query 157100 TATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTG 157159 |||| ||||||||| | || | ||||||||||||||| || || |||||| Sbjct 2192 TATTCTACTATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTA 2133 Query 157160 CTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATT 157219 ||||| | || ||||| || || ||||||||||| || || || ||||| |||| Sbjct 2132 CTTTTCCTATTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGAC 2073 Query 157220 TC---TATG-----------ATGTTGCGCATTAATGTAACCGCGGGCATTTGCTCGCGAA 157265 || |||| ||||| || ||||| | || | || ||| | Sbjct 2072 TCGATTATGGCAAACCACAATTGTTGAGCTTTAATTTTACGGTTAGCTTTTCC------- 2020 Query 157266 ACTGGCCTTTATCCTCGTAATGTTTGTACCAGTATTCAAAGTCATCACCATACGTATCGT 157325 || |||| |||||| | | ||| | ||||| || || || | ||| | Sbjct 2019 -CT--CCTT----CTCGTATTTTACGTAGAGATTCTCAAACTCCTCTCCCCAAACATCAT 1967 Query 157326 TGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATAC-CGTTTTCTTCAACGCGT 157384 ||| ||||| | | |||||||| |||||||| || | | | |||| |||||| Sbjct 1966 GTAGCCCTGGACATTTATGGGGACACATCAATGACCA-ATCCTCATCAGCTTCTACGCGT 1908 Query 157385 TTCATAAATATATCGGGAACCCATAAAGC 157413 ||||| |||| |||||||| ||||||||| Sbjct 1907 TTCATGAATAAATCGGGAATCCATAAAGC 1879 >seq30215 Length=1837 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||||| || || || ||||| || |||||||| || ||| | |||||| Sbjct 1729 ACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATGTACGACCGTCTTCC 1670 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | ||| || ||||| |||||| ||| || || || ||||| || ||||||||||| | Sbjct 1669 AATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGA 1610 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| || | | || | || || | || || || || | || | ||||| Sbjct 1609 ATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCTTA 1550 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || ||||| || || ||||| || ||||| Sbjct 1549 CCAGTCAAAGTCTTGACGAAAATCTGCAT 1521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506245138739280