Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq82395 187 4e-42 seq116385 149 9e-31 seq85406 122 1e-22 seq27445 98.7 1e-15 >seq82395 Length=2084 Score = 187 bits (206), Expect = 4e-42 Identities = 490/734 (67%), Gaps = 14/734 (2%) Strand=Plus/Minus Query 69896 CCTCTGTTGACGACCAAGACTGTCTTTGTCAAG-GGCGTCATCGAGGAGCTCTTGTGGAT 69954 ||| ||||||| || || | || ||| | || || ||| |||||||| |||||| | Sbjct 1191 CCTTTGTTGACCACGAAAAGAGT-TTTCTGGAGAGGAGTCGCGGAGGAGCTTTTGTGGTT 1133 Query 69955 GATTTCCGGATCGACCAATGCCAAAGAGCTGAGCCGA-AAGGGTGTACACATTTGGAGCG 70013 || || |||||||||||| || || || ||| ||| |||||| || Sbjct 1132 TATAAAAGGTCAGACCAATGCCAA-GATCTTGCAAGAGAAGAATGTGAGAATTTGGGACG 1074 Query 70014 GCAACAGTAGTCGAAGCGTTTTGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATC 70073 |||| |||| || ||||||| | || |||||||||||| ||||||| || | Sbjct 1073 GCAATAGTACCAGAGAGTTTTTGGACAAGTGTGGATTCACCGACAGAGAAGAGGGTGACC 1014 Query 70074 TGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGACTGCGAGA 70133 |||| || || ||||||||||| ||| | || | || | ||||| | ||| | Sbjct 1013 TGGGACCGGTCTACGGATTCCAATGGCGTCATTTCGGAGCAGAGTATAAAACCTGTCACG 954 Query 70134 CAGACTATTCGGGTCAGGGTGTTGATCAATTGCA-GACAATCATTGACACTCTCAAGACC 70192 |||||| | | || || || ||| || | ||| ||||| | | |||||| Sbjct 953 ATGACTATACCAACAAAGGCGTAGACCAACTGAATGACG-TCATTCAGAGAATCAAGAAT 895 Query 70193 AATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATG 70252 || || || || || |||| |||| | |||||||| | || | | | ||||| Sbjct 894 AACCCTACGGACAGACGGATTTGTATGTCTGCCTGGAATCCCGTGGACCTCCCCAAAATG 835 Query 70253 GCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCA--AATTGTCAT 70310 || | || || ||||| ||||| |||||||| ||| || | | || | || | |||| Sbjct 834 GCTTTGCCTCCTTGTCATTGTTTCGCTCAGTTCTAC--GTTCAAGGGGACGAACTCTCAT 777 Query 70311 GCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCT 70370 | || ||||| ||||| |||||| | || || || || || || || ||||| || | Sbjct 776 GTTTGATGTACCAGAGATCTGCCGATGTTGGGCTTGGAGTTCCGTTCAATATTGCCAGTT 717 Query 70371 ATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGCGCACGAGTTCGTAC 70430 || | ||||||| |||||||||| || || ||| || || | | ||| || || | Sbjct 716 ATGCATTGTTGACCTACATGATTGCCCATGTTTGCGGACTAAAGGTGGGCGACTTTGTTC 657 Query 70431 ACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAGGTGCAACTCG 70490 || | | || ||| ||||||| || ||||| | || || || || | || || | Sbjct 656 ACTCTTTCGGAGACACTCACGTTTACAAGAATCATGTGGAACCTTTGAAAGAACAGCT-G 598 Query 70491 AACGGGAG--CCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAAAATATTGA 70548 || | ||| || ||||| || || || |||| | |||||||||||||| || || Sbjct 597 AA-GAGAGTTCCAAGACCATTCCCTAAACTGGTCATAAACCGTAAAGTTGAAAAAATCGA 539 Query 70549 CAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAGATTCCCAT 70608 || || | ||||||||| | || |||| || ||||||||||| | ||| || Sbjct 538 GGACTTCAAATTCGAAGATTTCACTATCGAAGGATATGATCCATACCCAACCATTAAAAT 479 Query 70609 GGTTCTGGCTGTTT 70622 || ||||||||| Sbjct 478 GGAAATGGCTGTTT 465 >seq116385 Length=1425 Score = 149 bits (164), Expect = 9e-31 Identities = 362/542 (67%), Gaps = 15/542 (3%) Strand=Plus/Plus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| |||| || || ||||| || || ||||||||||| |||||||||| ||| | Sbjct 52 AGGCGGAGGCTTCGTTCTGGACTGTGGAGGAGGTCGATCTATCCAAGGACCAAGCCGACT 111 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGA--GAGTTTATATCGCACATTTTGGCCTTCTT 125155 |||||| |||| | | ||| || | || || || ||| ||||||| ||||| Sbjct 112 GGGAGA---AGTTGAAT--TCCGGAGAGAAGCACTTCATTTCCCACGTTTTGGCTTTCTT 166 Query 125156 TGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGAC 125215 |||| |||||||| || ||||| || || || || ||| ||| | || || | Sbjct 167 CGCCGCTTCCGATGGCATTGTCAATGAAAACTTGGTGGAACGTTTCACCCAGGAAGTCCA 226 Query 125216 CATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGG 125274 ||| | || | ||| || || || || ||||| || || |||||||| ||||||| Sbjct 227 GATTACTGAAG-CTCGCTGTTTCTATGGGTTCCAGATTGCTATGGAGAACGTCCACTCGG 285 Query 125275 AAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATGCTCT 125334 |||||||| || | || ||| ||||| |||||||| || | | || | |||| Sbjct 286 AAATGTACAGTATTTTAATCGACTCTTACATCCGCGATCCACAGGAAAGAGACTTCCTCT 345 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGA 125394 | ||||| |||| | | || | | | || |||||| | |||| | |||| Sbjct 346 TCAACGCTGTCGAGAATCTACCTTGTGTGAAGAAGAAGGCTGACTGGGCATTGTCTTGGA 405 Query 125395 TCGATGACGACAAGT---CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGG 125451 | || | || | | | | ||||| ||| | | || || || ||||| || | Sbjct 406 T---TGGCAGTAAATCCGCCACCTTTGCCGAGAGAATCATTGCTTTTGCTGCCGTTGAAG 462 Query 125452 GCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGC 125511 |||| ||||| || ||||| || || ||||| ||| | |||||| | || | |||| Sbjct 463 GCATTTTCTTCAGCGGAAGTTTCGCCGCGATCTTCTGGTTGAAGAAGAGGGGTTTGATGC 522 Query 125512 CCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTG 125571 | || |||| | || || |||| ||| | ||||| || || ||||||||||||| Sbjct 523 CTGGTTTGACCTTCTCCAATGAACTTATCTCTAGGGACGAAGGACTCCACTGTGACTTTG 582 Query 125572 CC 125573 || Sbjct 583 CC 584 >seq85406 Length=6629 Score = 122 bits (134), Expect = 1e-22 Identities = 281/421 (67%), Gaps = 18/421 (4%) Strand=Plus/Plus Query 127255 GCATCGGCAATCTCTCGGAATCGTCTATAGTCCAAGCGCCGAGGATAGCAACTGGTGCCG 127314 ||||| || || | ||||||| | ||||||||| |||| |||||| | ||| Sbjct 2655 GCATCAGCGATTTGACGGAATCTCTTGTAGTCCAAGTAACGAGAATAGCAGGAAATACCG 2714 Query 127315 GCTATGATTAGCCTAGGTTTGAATAGATTGGCACTCTCGGC--AAGTTTGGCATAGTCGA 127372 || ||||| | || ||||| || || ||| | | | ||| | | || || | Sbjct 2715 GCAATGATGACTTGTGGCTTGAAGAGGTTAGCATTGGCTTCCAAAGCATCG--TAATCAA 2772 Query 127373 CGAGTCCAGTCTGA-GGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCG 127431 || ||||| ||| || | ||| ||||| |||||||||||||| |||| ||| || ||| Sbjct 2773 TAAGACCAGT-TGATGGGTTCACTTTGTAAGGCATGCTTTCGAAGAAGATTGAGGTGGCG 2831 Query 127432 GACACGTT------------GCGGAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCG 127479 || | || | |||||| || |||| || || || ||||| | || Sbjct 2832 GAAATCTTCTTAGTTGGAGTGAAGAATCCATGAGTCAAATGACCACCATCGGGTAAGTCC 2891 Query 127480 AGTCCCATGATTCTACCGTGCGGTTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATC 127539 | ||||||||| | | ||| |||| | | ||||| || || ||||||||||| Sbjct 2892 AATCCCATGATACGGCTGTGAGGTTGGATAAGACCAGTATAAACAGCAAAGTTGGCTGGA 2951 Query 127540 GAGCCCGAGTACGGTTGTACACACACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTG 127599 || || ||||| ||||||||| || |||||||| |||||| ||| | || | Sbjct 2952 GATCCAGAGTAAGGTTGTACATTGACGCCCCATTCTTCTGGGTTCAAGTTGTAGGCCTCG 3011 Query 127600 AGACATCGCTGCTGTGCTAGCAGTTCGATGCGATCGATAAACTCGTTACCACCATAGTAT 127659 ||| || | || || | | |||||| ||||||| || | |||||| ||||||||| Sbjct 3012 AGAGCGCGTTTTTGAGCCAAAATTTCGATTTGATCGATGAATTGGTTACCGCCATAGTAT 3071 Query 127660 C 127660 | Sbjct 3072 C 3072 >seq27445 Length=3274 Score = 98.7 bits (108), Expect = 1e-15 Identities = 340/528 (64%), Gaps = 2/528 (0%) Strand=Plus/Plus Query 70045 CGGCTTCACCGACAGACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCA 70104 ||| || || || ||| |||| || || || || || || || || || |||||| | | Sbjct 2484 CGGATTAACTGATAGAGAAGAAGGTGACCTAGGTCCGGTTTATGGTTTTCAGTGGCGTTA 2543 Query 70105 CTCGGGCACCAAGTATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATT 70164 | || | |||| | ||| | || ||| |||||| || || ||||| | Sbjct 2544 TTTTGGAGCTGAGTACAAAACATGCCATGATGATTATATGGGTCAAGGAGTGGATCAGCT 2603 Query 70165 GCAGACAATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTC 70224 | | | ||| ||||| | || | |||||||| || | || ||| |||| || Sbjct 2604 TAAAAATGTTATTAACACTATAAAAAATAATCCAACCGACCGAAGAATCTGCATGTCGTC 2663 Query 70225 ATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTT 70284 |||||||||| ||| | | ||||||| |||| || ||||| || || | || || Sbjct 2664 CTGGAATCCTGTGGATATTCCAAAAATGGCTTTACCGCCATGTCATTGCTTCGTCCAATT 2723 Query 70285 TTACTCGTACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCT 70344 | | | ||| | | ||||| || | | | |||||| | || || || || || Sbjct 2724 CTTTGTGGAGGATAACGAGTTGTCTTGTTCACTTTATCAGCGTGCTGGGGATATTGGTCT 2783 Query 70345 CGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTAC 70404 || || || || || ||||| || ||| | | ||||| ||||||||||||| || Sbjct 2784 TGGAGTGCCATTCAATATTGCCAGTTATGCCTTATTGACATACATGATTGCTCATGTTTG 2843 Query 70405 CGGCCTGAAAGCGCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCA 70464 || ||||| | ||| || || || | ||||| || |||| | || ||| || Sbjct 2844 TGGTTTGAAAACTGGCGACTTTGTTCATAATATTGGAGATACTCATATCTACAAAAACCA 2903 Query 70465 CATCGAGCCATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGA-GT 70523 | || || ||||||| ||| | | | | | || ||||| ||||| |||| || | Sbjct 2904 TCTGGATCCTTTAAAGGAACAAGTTGGAAGAGTTCCAAGACC-ATTCCCTAGCTTGATAT 2962 Query 70524 TTGCTCGTAAAGTTGAAAATATTGACAGTTTTAAGTACGAAGATTTTA 70571 || | ||||| |||||||| || || | | |||||||||| Sbjct 2963 TTAACAGGAAAGTCGAAAATATCGAAGACTTCACATTTGAAGATTTTA 3010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739934837192040