Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq63354 105 4e-18 seq30215 93.3 3e-14 seq26001 91.5 9e-14 >seq63354 Length=4016 Score = 105 bits (116), Expect = 4e-18 Identities = 155/218 (71%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 ||||||||||| || | || ||||| ||||| || ||||| || ||||| || || | Sbjct 1988 CGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCG 1929 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || ||||||||||||||| || || |||||||| || || | || || || ||||| Sbjct 1928 TCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCTTTG 1869 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| ||| |||||| |||| || |||| || Sbjct 1868 TCTTGGATCTTGGCC---TTGACATTTTCAATGGTGTCGGAAGGTTCGACTTCCAAGGTA 1812 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || ||||| || || ||||| || ||||| Sbjct 1811 ATGGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCAT 1774 >seq30215 Length=1837 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 |||||||| | || ||||| ||||| ||||||||||| ||||| | | ||| ||| Sbjct 1729 ACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATGTACGACCGTCTTCC 1670 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||||||||||| || || ||||| || ||||| | || || |||||||| || | Sbjct 1669 AATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGA 1610 Query 33281 A---TCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTT 33337 | | ||| || || | | || || ||| || | ||| |||| || || || Sbjct 1609 ATTTTAGCC---TTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTC 1553 Query 33338 TTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || | ||| || |||||||| |||||| Sbjct 1552 TTACCAGTCAAAGTCTTGACGAAAATCTGCATG 1520 >seq26001 Length=10617 Score = 91.5 bits (100), Expect = 9e-14 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATC 33219 ||| ||||| | || ||||||||||| ||||||||||| || | | | | ||| || Sbjct 8771 CACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTACGGCCGTCTTC 8712 Query 33220 CAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCT 33279 | |||||| ||| || || || | |||||| || | || || || ||||| || Sbjct 8711 AAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG 8652 Query 33280 AATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTT 33339 |||| ||| || | | || || || |||| || || || || || ||||| Sbjct 8651 AATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTACTTCTAGGGTAATGGTTTT 8592 Query 33340 TCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| || |||||||||||||||||||| Sbjct 8591 ACCCGTGAGGGTTTTTACGAAAATTTGCAT 8562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318306030204342