Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq30215 134 3e-26 seq63354 132 1e-25 seq116385 118 2e-21 seq58276 89.7 1e-12 >seq30215 Length=1837 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || |||||||| || || || | || | ||||||||| | ||| |||||| Sbjct 1717 GTGGACTCCTTTTGAATATTGTAATCTGACAATGTACGACCGTCTTCCAATTGCTTTCCA 1658 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | |||||| || ||||| || |||||||| || ||||| || || || Sbjct 1657 GCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGAATTTTAGCCTTG 1598 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||||| ||| || ||||| | ||||| ||||||||||| | || Sbjct 1597 ACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCTTACCAGTCAAAGTC 1538 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1537 TTGACGAAAATCTGCAT 1521 >seq63354 Length=4016 Score = 132 bits (146), Expect = 1e-25 Identities = 150/201 (75%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || || || || || ||||| || | || | |||||||| | ||| |||||| Sbjct 1970 GTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCTTCCAATTGCTTTCCA 1911 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | |||||||| || || ||||| ||||| || || ||||| || || Sbjct 1910 GCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTTGGCCTTG 1851 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 |||||||| | ||| ||| |||||| || || | ||||| |||||||||||||| || Sbjct 1850 ACATTTTCAATGGTGTCGGAAGGTTCGACTTCCAAGGTAATGGTCTTACCAGTAAGGGTC 1791 Query 104543 TTTACAAATATCTGCATTTTG 104563 || || || ||||||||| || Sbjct 1790 TTGACGAAGATCTGCATTCTG 1770 >seq116385 Length=1425 Score = 118 bits (130), Expect = 2e-21 Identities = 354/538 (66%), Gaps = 15/538 (3%) Strand=Plus/Plus Query 268752 AGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATT 268811 |||| | ||||| || |||||||| || || || ||||| || | ||| | || | Sbjct 52 AGGCGGAGGCTTCGTTCTGGACTGTGGAGGAGGTCGATCTATCCAAGGACCAAGCCGACT 111 Query 268812 GGAAAAATTTAAAACCAGAAGA-AAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCA 268870 || | || || || | | ||| ||| | || || || | || | || || || || Sbjct 112 GGGAGAAGTTGAATTCCGGAGAGAAGCAC-TTCATTTCCCACGTTTTGGCTTTCTTCGCC 170 Query 268871 GTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATT 268930 | | ||||| || || || ||||| | || || ||| || || || |||||| Sbjct 171 GCTTCCGATGGCATTGTCAATGAAAACTTGGTGGAACGTTTCACCCAGGAAGTCCAGATT 230 Query 268931 CCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATG 268990 ||||||| | ||||| || || |||||||| ||||| || || | || || || ||| Sbjct 231 ACTGAAGCTCGCTGTTTCTATGGGTTCCAGATTGCTATGGAGAACGTCCACTCGGAAATG 290 Query 268991 TACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCT 269050 |||||| | ||||| || |||| || ||| || | ||||| |||| | ||| Sbjct 291 TACAGTATTTTAATCGACTCTTACATCCGCGATC-CACAGGAAAGA---GACT-TCCTCT 345 Query 269051 TCTA---TGAGAACTATGGAC--TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGA 269105 || | || | || || ||||||| || || |||| ||||| || |||| Sbjct 346 TCAACGCTGTCGAGAATCTACCTTGTGTGAAGAAGAAGGCTGACTGGGCATTGTCTTGGA 405 Query 269106 TAAACGATAG---CGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTA 269162 | | || ||| | | | || || | |||||||||| || || ||||| | Sbjct 406 TTGGCAGTAAATCCGCCACCTTTGCCGAGAGAATCATTGCTTTTGCTGCCGTTGAAGGCA 465 Query 269163 TATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAG 269222 | ||||| || ||| ||||| ||||| ||||||||||| || || | ||||| | Sbjct 466 TTTTCTTCAGCGGAAGTTTCGCCGCGATCTTCTGGTTGAAGAAGAGGGGTTTGATGCCTG 525 Query 269223 GATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGC 269280 | || || ||||| || ||| | || ||||||||||| | ||||| ||||| || Sbjct 526 GTTTGACCTTCTCCAATGAACTTATCTCTAGGGACGAAGGACTCCACTGTGACTTTGC 583 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 269141 GCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTG 269200 |||||||||||||| ||||| || ||||| || ||| ||||| ||||| |||||| Sbjct 611 GCTTTTGCCGCTGTTGAAGGCATTTTCTTCAGCGGAAGTTTCGCCGCGATCTTCTGGTTG 670 Query 269201 AAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAA 269260 ||||| || || | ||||| || || || ||||| || ||| | || ||||||||| Sbjct 671 AAGAAGAGGGGTTTGATGCCTGGTTTGACCTTCTCCAATGAACTTATCTCTAGGGACGAA 730 Query 269261 GGTTTACACTGCGACTTCGC 269280 || | ||||| ||||| || Sbjct 731 GGACTCCACTGTGACTTTGC 750 >seq58276 Length=5954 Score = 89.7 bits (98), Expect = 1e-12 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 165224 GGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATATTAATAAACCTTTA 165283 ||||| || |||||||| | | ||| | || | || ||| || | || || || Sbjct 1916 GGTATTTGCGATAACTTGCTGATGTGCACAGCCCGTGCCTGGGATCTGTCAAAGCCATTT 1975 Query 165284 CTTTTCTGTCCAGCTATGAATACACTTATGTGGGAACATCCTATTACTGAGCAGCATATA 165343 |||||||||| ||||||||||| |||| | ||||| || |||||| |||| ||| Sbjct 1976 ATTTTCTGTCCTGCTATGAATACGAAAATGTATAATCATCCAATAACTGAGGAGCAAATA 2035 Query 165344 GAAACTCTTAAGCATATGGGGTACATAGAAGTTGAGTGTATTGAGAAAAAGCTAGCTTGT 165403 |||| || || | ||| ||| |||||| || ||| ||| | |||| |||| Sbjct 2036 GAAAAGCTCAAAGGTTGGGGATACCGCGAAGTTCCTTGCATTTCGAAGACACTAGTTTGT 2095 Query 165404 GGTGATATTGGAAAAGGTGCCATGGCAGAAGT 165435 ||||||| || || ||||| ||||| || || Sbjct 2096 GGTGATACCGGCAATGGTGCTATGGCCGAGGT 2127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149607781549332