Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq17584 132 4e-26 >seq17584 Length=4186 Score = 132 bits (146), Expect = 4e-26 Identities = 176/241 (73%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 || || || || || || | | ||||||| || ||||| ||||| || | ||| Sbjct 2031 CCTGTTGATCCAAAACCTGCGGCGCCGCGTTCTGTGTCATCCAAAGTCTTCATCTCGACG 2090 Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359 | | |||||| |||| |||| || ||||| ||||| || |||||||||||||| || Sbjct 2091 ATTTCTGGGTAGAATATTTGTTCACAGATTAGTTGAGCGATTCTGTCTCCCTTCTTGACA 2150 Query 5360 TCAAAGTCGCTGTTTCCGAA--GTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 || ||||| ||| | | ||| ||| |||| || || |||| ||| || ||||| |||| Sbjct 2151 TCGAAGTC-CTGAT-CGGAATGGTTGAACAAAACGACGCCGAGATTTCCCCGGTAATCTT 2208 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 ||||||| || |||||||| || ||||| |||| || || || ||||| || | ||| | Sbjct 2209 CGTCGATGACTCCAGCGCCAACATCGATGAAGTTCTTTACAGCCAGGCCAGATCTTGGAG 2268 Query 5478 C 5478 | Sbjct 2269 C 2269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447071056302480