Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq27445 138 1e-27 seq23535 104 3e-17 >seq27445 Length=3274 Score = 138 bits (152), Expect = 1e-27 Identities = 377/567 (66%), Gaps = 18/567 (3%) Strand=Plus/Minus Query 6693 GATAGCTGGATGAGGATTATAATCTAACAATTC-AAAATCTTCAAATTTAAAATCACATA 6751 ||| | ||||| ||||||||| || |||||| | ||||||||||||| | || || | Sbjct 3042 GATCGGTGGATAAGGATTATA-TCCAACAATACTAAAATCTTCAAATGTGAAGTCTTCGA 2984 Query 6752 AATTATCAGACtttttttttAA-TATTACAACAGGTGAAGGTTTT---ATTGATCGAGTT 6807 ||| || |||||| | |||| ||| | ||| | ||| || | | || | Sbjct 2983 TATTTTC-GACTTTCCTGTTAAATATCAAGCTAGGGAATGGTCTTGGAACTCTTCCA--- 2928 Query 6808 AATTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGA 6867 | |||||| |||| || | | ||| | | || ||||||| |||||| | ||||| Sbjct 2927 ACTTGTTCCTTTAAAGGATCCAGATGGTTTTTGTAGATATGAGTATCTCCAATATTATGA 2868 Query 6868 ATAAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAA 6927 | ||| || || | ||||| | || | | |||||||| | ||||| ||||| |||||| Sbjct 2867 ACAAAGTCGCCAGTTTTCAAACCACAAACATGAGCAATCATGTATGTCAATAAGGCATAA 2808 Query 6928 GAAGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAA 6987 || | ||| || || || || | || ||||| | | | |||||| | |||| Sbjct 2807 CTGGCAATATTGAATGGCACTCCAAGACCAATATCCCCAGCACGCTGATAAAGTGAACAA 2748 Query 6988 GATAAAATATTGTCTATAGCATAAAATTGACACAATACATGACATGGAGGTAAAACAGCC 7047 || || || || || | ||||| || ||||||||| |||||| ||| Sbjct 2747 GACAACTCGTTATCCTCCACAAAGAATTGGACGAAGCAATGACATGGCGGTAAA---GCC 2691 Query 7048 TGATCT---ATATCAGATGGATTCCAAGCAGTCATTAAAATACGTCTATCATTTGGATTT 7104 | | ||||| |||||||| | | ||| | || | || || ||||||| Sbjct 2690 ATTTTTGGAATATCCACAGGATTCCAGGACGACATGCAGATTCTTCGGTCGGTTGGATTA 2631 Query 7105 GTTTTTAATTTTGTTATAATTATTTGTAAT-TGATCTATACCCTGACCTTCATAATTAGT 7163 |||||| | ||||| | |||| ||| ||||| | || ||||| ||||| | Sbjct 2630 TTTTTTA-TAGTGTTAATAACATTTTTAAGCTGATCCACTCCTTGACCCATATAATCATC 2572 Query 7164 ATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACCCATAAATAGGACCTAA 7223 ||| || || | || | ||||||||||| | ||| ||||| ||||||| ||||||| Sbjct 2571 ATGGCATGTTTTGTACTCAGCTCCAAAATAACGCCACTGAAAACCATAAACCGGACCTAG 2512 Query 7224 ATCACCTTCTTCACGATGATTAAATCC 7250 ||||||||||| | || | | ||||| Sbjct 2511 GTCACCTTCTTCTCTATCAGTTAATCC 2485 >seq23535 Length=11542 Score = 104 bits (114), Expect = 3e-17 Identities = 126/169 (75%), Gaps = 6/169 (4%) Strand=Plus/Minus Query 164498 AATTAGGCTGTAAACATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAA 164557 |||| |||||||||||| | ||||||||||| ||| ||||||||||||| ||||| | Sbjct 3998 AATTGGGCTGTAAACATGTCAAAGGAATTTTGTTATATGGACCTCCTGGAACTGGTAAGA 3939 Query 164558 CATTAATGGCTCGATGCATTGCTCAAGCTTTTAAA---TCGCGACCCGTTAAAATTGTTA 164614 | | |||||||| |||| || | || || ||| || || |||||||| | Sbjct 3938 CTCTTATGGCTCGTCAAATTG-GAAATATGTTGAATGCTCGAGAGCC--AAAAATTGTGA 3882 Query 164615 ATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGT 164663 |||| ||| || | ||| | || ||||| ||||| ||||||||||| || Sbjct 3881 ATGGACCTCAAATTTTGGATAAGTATGTTGGTGAATCAGAAGCTAACGT 3833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594967920656400