Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq63354 105 6e-18 seq26001 96.9 3e-15 seq17584 96.9 3e-15 seq30215 93.3 4e-14 >seq63354 Length=4016 Score = 105 bits (116), Expect = 6e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||||||| | || || |||||||| | ||| || ||| || ||| Sbjct 1988 CGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCG 1929 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || |||| || ||||| | ||||| || | ||| |||||||| || || || |||||| Sbjct 1928 TCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCTTTG 1869 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| | | ||||| | | ||||| || | || ||| Sbjct 1868 TCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGACTTCCAAGGTAATG 1809 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || || |||||||| || || || ||||||||||| || Sbjct 1808 GTCTTACCAGTAAGGGTCTTGACGAAGATCTGCATTCT 1771 >seq26001 Length=10617 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| || || | |||||| || ||||| | || |||||| | ||| | || || Sbjct 8771 CACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTACGGCCGTCTTC 8712 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || || || || | ||||| ||||||||||||||||||||||| || |||||||| | Sbjct 8711 AAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG 8652 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || || || || ||| ||| || | | || || || | || |||||||| Sbjct 8651 AATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTACTTCTAGGGTAATGGTTTT 8592 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 || || || ||||| || || || ||||| || Sbjct 8591 ACCCGTGAGGGTTTTTACGAAAATTTGCATTCT 8559 >seq17584 Length=4186 Score = 96.9 bits (106), Expect = 3e-15 Identities = 181/261 (69%), Gaps = 14/261 (5%) Strand=Plus/Plus Query 43554 CCGGTGGACCCGAATCCCGCGGATCCGCGTTCCGTTTCTTC-AATGTCCAGTTCCGGATC 43612 || || || || || || |||| |||||||| || || || || ||| ||| ||| Sbjct 2031 CCTGTTGATCCAAAACCTGCGGCGCCGCGTTCTGTGTCATCCAAAGTC---TTC---ATC 2084 Query 43613 TTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTCCCTG 43672 | | | | ||| ||||| |||| | |||||| || || || |||||||||||||||| Sbjct 2085 T-CGACGATTTCTGGGTAGAATATTTGTTCACAGATTAGTTGAGCGATTCTGTCTCCCTT 2143 Query 43673 CAGCACGTAAAAAGTGTGCTTATCG---TGGTTGAATAGCACCACGCCCACGTTTCCCCT 43729 | || | || || || |||| |||||||| | || ||||| | ||||||| Sbjct 2144 CTTGACATCGAA---GTCCTGATCGGAATGGTTGAACAAAACGACGCCGAGATTTCCCCG 2200 Query 43730 ATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTGA 43789 || |||||||| || || || ||||| || || || || ||| |||| ||| || Sbjct 2201 GTAATCTTCGTCGATGACTCCAGCGCCAACATCGATGAAGTTCTTTACAGCCAGGCCAGA 2260 Query 43790 TCTGGCGGCCACCCTGCCATA 43810 ||| | ||||| || ||||| Sbjct 2261 TCTTGGAGCCACTCTACCATA 2281 >seq30215 Length=1837 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856 ||||| || | ||| || |||||||| | || ||||| | | | ||| || || | Sbjct 1729 ACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATC--TGACAATGTACGACCGTCTT 1672 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||| || ||||| | ||||| || | || || ||||||||||||||||||||||| | Sbjct 1671 CCAATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTT 1612 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 |||||| |||||||| ||| || || | | || || || | || || || | Sbjct 1611 GAATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCT 1552 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | ||||| | ||| || || || ||||||||| Sbjct 1551 TACCAGTCAAAGTCTTGACGAAAATCTGCATG 1520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447611035780440