Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29]
121,379 sequences; 412,270,594 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq63354 105 6e-18
seq26001 96.9 3e-15
seq17584 96.9 3e-15
seq30215 93.3 4e-14
>seq63354
Length=4016
Score = 105 bits (116), Expect = 6e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||||||||||||| | || || |||||||| | ||| || ||| || |||
Sbjct 1988 CGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCG 1929
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|| |||| || ||||| | ||||| || | ||| |||||||| || || || ||||||
Sbjct 1928 TCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCTTTG 1869
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || |||||||| | | ||||| | | ||||| || | || |||
Sbjct 1868 TCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGACTTCCAAGGTAATG 1809
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010
|| || |||||||| || || || ||||||||||| ||
Sbjct 1808 GTCTTACCAGTAAGGGTCTTGACGAAGATCTGCATTCT 1771
>seq26001
Length=10617
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||| || || | |||||| || ||||| | || |||||| | ||| | || ||
Sbjct 8771 CACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTACGGCCGTCTTC 8712
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|| || || || | ||||| ||||||||||||||||||||||| || |||||||| |
Sbjct 8711 AAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG 8652
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||| || || || || ||| ||| || | | || || || | || ||||||||
Sbjct 8651 AATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTACTTCTAGGGTAATGGTTTT 8592
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010
|| || || ||||| || || || ||||| ||
Sbjct 8591 ACCCGTGAGGGTTTTTACGAAAATTTGCATTCT 8559
>seq17584
Length=4186
Score = 96.9 bits (106), Expect = 3e-15
Identities = 181/261 (69%), Gaps = 14/261 (5%)
Strand=Plus/Plus
Query 43554 CCGGTGGACCCGAATCCCGCGGATCCGCGTTCCGTTTCTTC-AATGTCCAGTTCCGGATC 43612
|| || || || || || |||| |||||||| || || || || ||| ||| |||
Sbjct 2031 CCTGTTGATCCAAAACCTGCGGCGCCGCGTTCTGTGTCATCCAAAGTC---TTC---ATC 2084
Query 43613 TTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTCCCTG 43672
| | | | ||| ||||| |||| | |||||| || || || ||||||||||||||||
Sbjct 2085 T-CGACGATTTCTGGGTAGAATATTTGTTCACAGATTAGTTGAGCGATTCTGTCTCCCTT 2143
Query 43673 CAGCACGTAAAAAGTGTGCTTATCG---TGGTTGAATAGCACCACGCCCACGTTTCCCCT 43729
| || | || || || |||| |||||||| | || ||||| | |||||||
Sbjct 2144 CTTGACATCGAA---GTCCTGATCGGAATGGTTGAACAAAACGACGCCGAGATTTCCCCG 2200
Query 43730 ATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTGA 43789
|| |||||||| || || || ||||| || || || || ||| |||| ||| ||
Sbjct 2201 GTAATCTTCGTCGATGACTCCAGCGCCAACATCGATGAAGTTCTTTACAGCCAGGCCAGA 2260
Query 43790 TCTGGCGGCCACCCTGCCATA 43810
||| | ||||| || |||||
Sbjct 2261 TCTTGGAGCCACTCTACCATA 2281
>seq30215
Length=1837
Score = 93.3 bits (102), Expect = 4e-14
Identities = 149/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA--TCCT 94856
||||| || | ||| || |||||||| | || ||||| | | | ||| || || |
Sbjct 1729 ACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATC--TGACAATGTACGACCGTCTT 1672
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
||| || ||||| | ||||| || | || || ||||||||||||||||||||||| |
Sbjct 1671 CCAATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTT 1612
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
|||||| |||||||| ||| || || | | || || || | || || || |
Sbjct 1611 GAATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCT 1552
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008
| ||||| | ||| || || || |||||||||
Sbjct 1551 TACCAGTCAAAGTCTTGACGAAAATCTGCATG 1520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447611035780440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |