Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq33852 203 5e-48 seq112942 188 1e-43 seq23011 183 5e-42 seq106773 141 1e-29 seq5678 140 5e-29 >seq33852 Length=1988 Score = 203 bits (224), Expect = 5e-48 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || || |||||||| | | |||||| |||||||||||||| ||||| ||||||||||| Sbjct 968 GCCAAACGTCATCGTAAAGTTCTTCGTGATAACATCCAAGGTATCACTAAGCCAGCTATT 909 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||||||||| |||||||| |||||||| ||| | ||||| ||| | || || || | | Sbjct 908 CGTCGTCTGGCCCGTCGTGGAGGAGTCAAACGTATTTCTGGCTTGATTTACGAGGAAACT 849 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || |||||| ||||| | | | ||| |||| |||||| | || || ||| Sbjct 848 CGTGGAGTCTTGAAGGTCTTCTTGGAAAACGTAATCCGTGATGCAGTAACTTACACTGAG 789 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| |||||| | ||||| | || ||||| ||||| |||||||| Sbjct 788 CACGCCAAGCGTAAGACCGTCACCGCTATGGACGTTGTTTATGCCTTGAAGCGTCAAGGA 729 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | || ||||| ||| ||||| Sbjct 728 AGAACTTTGTACGGTTTCGGAGGTTAA 702 >seq112942 Length=1600 Score = 188 bits (208), Expect = 1e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||||||| | | |||||| || |||||||||||||||||||| |||||||| Sbjct 415 GCTAAGCGTCATAGGAAGGTTCTTCGTGACAACATCCAAGGAATCACCAAACCAGCTATT 356 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || || | || ||||| || ||| | |||||| || |||||||||||| | Sbjct 355 CGTCGTCTTGCGCGCAGAGGAGGAGTTAAACGTATTTCTGGACTGATCTATGAAGAGACT 296 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||| |||| | | | |||||| | |||||| | || || || Sbjct 295 CGTGGTGTCTTGAAGGTCTTTTTGGAAAACGTTATTCGCGATGCTGTTACTTACACAGAA 236 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||||| | ||||| || || | |||||| | || || || |||||| | ||||| Sbjct 235 CACGCTAAAAGGAAGACAGTTACTGCTATGGATGTGGTGTACGCTTTGAAAAGACAAGGA 176 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | |||||||||||| ||||| Sbjct 175 AGAACTTTGTATGGTTTTGGAGGTTAA 149 >seq23011 Length=4387 Score = 183 bits (202), Expect = 5e-42 Identities = 198/261 (76%), Gaps = 1/261 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 ||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| || ||| Sbjct 4117 CTTCGTGATAACATCCAGGGAATTACCAAGCCCGCTATCCGCCGTCTGGCTCGCCGAGGT 4058 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || || |||||| | || ||| | |||| || |||| |||| || |||| | || Sbjct 4057 GGTGTGAAGCGTATTTCCGGACTCATCTACGAGGAGACCCGTGGAGTGCTGAAAGTGTTT 3998 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| || |||| ||||||| || || ||||| ||||| || || ||||||||| Sbjct 3997 CTGGAGAATGTGATCCGTGATGCTGTCACATACACCGAACACGCCAAGCGAAAGACTGTC 3938 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGA 16693 || |||||||| | |||||||| ||||||||||||| || | | || || || ||| Sbjct 3937 ACAGCCATGGATGTTGTCTATGCCCTGAAACGTCAAGGACGCACTCTGTACGGATTCGGA 3878 Query 16694 AGTT-AATCTTCTAATCAAAC 16713 ||| ||| | ||| ||||| Sbjct 3877 GGTTAAATTATATAACCAAAC 3857 >seq106773 Length=2735 Score = 141 bits (156), Expect = 1e-29 Identities = 101/116 (87%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||| |||||| | | | |||||| |||||||||||||| || ||||||||||| || Sbjct 116 CGCTAAACGTCATAGGAAAGTTCTTCGTGATAACATCCAAGGTATTACCAAGCCAGCAAT 57 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAG 16547 ||||||| ||||||||||||||||||| || ||| ||||||||||| ||||||||| Sbjct 56 CCGTCGTTTGGCTCGTCGTGGTGGAGTGAAACGTATCTCTGGATTGATCTATGAAG 1 >seq5678 Length=25936 Score = 140 bits (154), Expect = 5e-29 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 16495 TCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 |||| | |||||| ||||||| ||||| ||| ||||||||||| |||| || || | ||| Sbjct 23360 TCGTTTAGCTCGTGGTGGTGGTGTCAAACGTATCTCTGGATTGATCTACGAGGATAATCG 23301 Query 16555 TGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCA 16614 || || |||||| | ||| | | | || |||| ||||||| || || | | || Sbjct 23300 TGGAGTCTTGAAGGTGTTCTTGGAAAATGTCATCCGTGATGCTGTCACATACATTAAACA 23241 Query 16615 CGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || |||||||||||||||||| | |||||| | || ||||||||||| | ||||| || Sbjct 23240 TGCCAAACGTAAGACTGTCACCGCTATGGATGTGGTTTATGCATTGAAGAGGCAAGGACG 23181 Query 16675 TAAGATTTATGGTTTTGGAAGTTAA 16699 || | || ||||| ||| ||||| Sbjct 23180 TACATTGTACGGTTTCGGAGGTTAA 23156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78964222330647