Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq48925 89.7 1e-13 seq1247 87.8 4e-13 >seq48925 Length=1516 Score = 89.7 bits (98), Expect = 1e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 4532 TTCTTAAGAAAATACACCTAGTCTTGAAATTTGAGCAATCAGACTGGCTCAAATCATATA 4591 |||| || ||| |||| || | |||| ||| ||| || ||| | ||| |||| Sbjct 865 TTCTAAAAAAAGTACATAAAGGTATAAAATCTGAACAAAAAGCATGGTTAAAAAGTTATA 806 Query 4592 TCGATAAAAATACCGCATGCCGAAAACTAGCTAAGAATGAGTTCGaaaaaaaCTTTTATA 4651 | ||||| ||||| | |||| ||||| ||| | ||||| || |||||| | |||| | Sbjct 805 TTGATAAGAATACAGAATGCAGAAAAAATGCTCAAAATGATTTTGAAAAAGATTTTTTCA 746 Query 4652 AATTAATGAATAATGCGGTTTTTGGAAAGACGATGGAGAATGTACGAAA 4700 |||||||||||||| | || ||||||| ||||| ||||| |||| Sbjct 745 AATTAATGAATAATAGTGCTTATGGAAAGCAAATGGAAAATGTTAGAAA 697 >seq1247 Length=3828 Score = 87.8 bits (96), Expect = 4e-13 Identities = 126/175 (72%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 5545 CTGCCCAGGCATATTTTGAAAATATATCTATGATTGTAAGCAGATACTTGTATCCTTTAT 5604 |||| | |||||||| |||||||||||||||| ||| | | ||| || ||||| |||| Sbjct 3152 CTGCGTATGCATATTTAGAAAATATATCTATGACTGTTAAAATATATTTATATCCCTTAT 3093 Query 5605 TGACTGTTGCATATGGAATCATCTCAACCAAGTCAGCTTGCCAAGTCTCATCGAGACC-- 5662 | || | |||||||||||| |||| | || ||||||||| |||| | ||| Sbjct 3092 TTTCTTTACTATATGGAATCATTTCAATTAGATCTATTTGCCAAGTGTCATTAATACCCT 3033 Query 5663 TC-GGATATCAACATGACGACGTTTATAGTTTCTACGAGCTGGTTTGTGAAGCTC 5716 || ||| |||| ||| ||||| || ||| | | ||| | |||||||||| Sbjct 3032 TCTGGA---CAACTCTACGTCGTTTGTAATTTTTTCTCTCTGATCTGTGAAGCTC 2981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97833182087966