Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq93051 383 2e-101 seq116385 163 4e-35 seq36631 82.4 9e-11 >seq93051 Length=3786 Score = 383 bits (424), Expect = 2e-101 Identities = 672/965 (70%), Gaps = 20/965 (2%) Strand=Plus/Minus Query 62885 GTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTAT 62944 |||||| || | ||||| | ||| || || || | |||| | | | | ||||| || Sbjct 2244 GTTCAATGCTATGGATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAATATTCTAC 2185 Query 62945 TATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTT 63004 ||| || ||||||||||| || || || || || |||| |||||||||||||| || | Sbjct 2184 TATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCT 2125 Query 63005 GTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 63064 ||||| ||||| ||||| | ||| |||| ||||||||||||| || || || || || Sbjct 2124 ATTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTCGATTAT 2065 Query 63065 CGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTCTTTCGTATA 63123 || ||| | | |||| || ||| || | || | | ||| | || | |||||| Sbjct 2064 GGCAAACCACAATTGTTGAGCTTTAATTTTACGGTTAGCTTTTCCCTCCT-TCTCGTATT 2006 Query 63124 GT--GTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATC 63181 | ||| | | || || ||||| ||||||||||||| | | || ||||||| || Sbjct 2005 TTACGTAGAGATTC--TCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACATTTATG 1948 Query 63182 CGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAAT 63241 ||||||||||| ||||| || | ||| | | || |||||||| || | ||| ||||| Sbjct 1947 GGGACACATCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATCGGGAAT 1888 Query 63242 CCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63301 ||| | ||| |||||||||||| | || | || || || |||||||| || || | Sbjct 1887 CCATAAAGCATAAAATAGATCTCTTGCTCGGAGCTCATCTTTACCTGTATTTTTCTTCAA 1828 Query 63302 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGG 63361 || | || | | ||||||||||||||| || || || || || || | | |||| || Sbjct 1827 GTCTAAAAATTCAAAAATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAGCTCCGGG 1768 Query 63362 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63421 | ||| ||||| |||||||| | ||| | || |||||| | ||||| | ||| || Sbjct 1767 TCTTTTATTTCCACCCTGATCCACATATTTTGCAACGTTATTGAACACTCTAAGCATAGG 1708 Query 63422 AATAATACCGTTTGATATACCATTGGTACCGGAGATA-TAGCTTCCACTGGCACGAAT-- 63478 | | |||||| || | ||||| || || | ||| ||| | || | |||||||| Sbjct 1707 TACTAAACCGTTAGAAGTGCCATTAGTTCCTGCTATAGTAG-TGCCTTTAGCACGAATGC 1649 Query 63479 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63538 | | | ||| || ||| ||||| || || ||||| || | ||||||| ||| | Sbjct 1648 AATGCACATT--TATACCAATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTTCGAC 1591 Query 63539 CGTGTCATAGATACCCTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACA 63597 | | | |||| || || || ||| | || ||||||| ||||||||| || | Sbjct 1590 TGATTTAAAGATTCCTTCAATTGAGTCAGAGCACATTGTTAAG-AGAAAACAGGATGATA 1532 Query 63598 TTT---GGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 63654 || || || | ||| | |||| || | |||||| ||||| || |||| || Sbjct 1531 GTTGAGGGCGAGGTGTAGCTGCCGC---GAACAGGGTAGGTGAAGCATGGATAAAATATC 1475 Query 63655 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTA 63714 |||| || | || || || ||||| |||||||| || ||||| | ||||||||||| Sbjct 1474 TTTCTGATAAAAGGTTATATGTCTCTATAGCTGAATCAATATCATTTCCATGAATTCCTA 1415 Query 63715 CTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACA 63774 | | || | ||| | |||||| || |||||||| |||| ||| ||||||||||| | Sbjct 1414 CGGACACTCTCATAAGCATGTGTTGTGGTCTTTCGGCGATTTTGCCATTTATTTTCAATA 1355 Query 63775 AGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAA 63834 | || || |||||| || ||||| ||||| ||||||||| ||| || | || |||| Sbjct 1354 AATAAGAGCGTTCCAAGGTCTTAAATCCAAAGTAGTTGTATCCAAAATCCCTATCATAAA 1295 Query 63835 TAATA 63839 ||||| Sbjct 1294 TAATA 1290 Score = 284 bits (314), Expect = 2e-71 Identities = 555/814 (68%), Gaps = 11/814 (1%) Strand=Plus/Minus Query 62015 TGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAA 62074 |||||| || ||||| | ||| ||||| || ||||| || ||||| ||||| | ||||| Sbjct 3287 TGCGGGCTTAGTACGCAAATAATACATACCAGTTTTAAGCCCGAGTTTCCATGCATAAAA 3228 Query 62075 ATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACT 62134 |||||| || || || |||| | || || |||| ||| || || | || ||||| Sbjct 3227 ATGCATTGATGTGAGCTTTCCATAATTTGGTTCCGCTACATGAATGTTAAATGACTGACT 3168 Query 62135 TTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTAT-GATCGTCTTTTGTGGA-ATT 62192 ||| || ||||| || || | || |||||||||| || ||| |||| | || ||| Sbjct 3167 TTGGTCAATGAAAGCACCACGATCAGCAGCCATTTGAATTGATG--CTTTGATAGAGATT 3110 Query 62193 TCCCAAATAGTTTTATAAA-CTCGCTTAATATCTTCTGGAAGGTT-TGTATTC--TGAAT 62248 ||||||| |||||| |||| ||| | || ||| | | |||| | | |||| ||||| Sbjct 3109 TCCCAAACAGTTTTGTAAAGCTCACGTA-TATTTGCGGGAATTCTGTCTATTTCTTGAAT 3051 Query 62249 GGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGGT 62308 || |||| | | || || ||||| || ||||||| ||||| | | | || || Sbjct 3050 AGAACCACGTTTAGAAATGATTTCGTTCTTCATATCATCATCCCATAGATCTATTTCCGT 2991 Query 62309 TAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGT 62368 ||| || | | | || ||||||| || || || |||||||| || ||||| || | Sbjct 2990 CAAATCTTTCAATAAGTGATGATTAACCACCTGGAACTCTCCAGATAAGACTCTGCGGTT 2931 Query 62369 GTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGA 62428 ||||||||| || || || || | || |||||||| |||||||||||||| || || Sbjct 2930 ATAAATATTAGATGTGTATGGCTCGAAGGATTCATTATTACCCAAAATTTGAGCTGTGGA 2871 Query 62429 TGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62488 || || ||||| || || | |||| ||||| | || | | | || || || Sbjct 2870 CGCTGTAGGCATTGGAGCAAGTAATAGGGAGTTTCTTACGCCATGCAATTTTATCTTTTC 2811 Query 62489 TTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAG 62548 ||| | | || ||| | ||| | || | || || || Sbjct 2810 TTTCAATGCTTGCCAGTCCCATAAGTCGGTTGGAGTTTTATCCCACATATCATACTGGAG 2751 Query 62549 AATACCGTTACTGGC-GTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTA 62607 ||| || || || | | || |||| ||||||| || |||||||| ||||| ||||| | Sbjct 2750 AATTCCTTTGCTTACTGGAC-TTCCTTCATATGTTTCATATGGTCCATCCTTTTCAGCCA 2692 Query 62608 GTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGAT 62667 |||||||||| || || | || || || ||||| ||||| || || | | || | Sbjct 2691 GTTCACAACTAGCTTCAAGAGCTCCATAGTAAATTGTTTCAAAAATTTGTTGGTTCAACA 2632 Query 62668 CTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTT 62727 ||| ||||| ||| ||| | ||| || | | ||| || || || | ||||||| Sbjct 2631 ATTGAGCTTCTTTGCTTTCATAAGGAAAACGCATAATAATCAAAGCATCAGAAAATCCTT 2572 Query 62728 GAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGAT 62787 ||||||||||||| ||||||||||||| | ||| || | | ||||||||| | |||| Sbjct 2571 GAACACCAATACCTATAGGTCTATGTCGCAAATTCGATTTCTTAGCTTCTGGCAATGGAT 2512 Query 62788 AATAATTAATATCTATAATTTTATTGAGATTTCT 62821 ||||||| | ||| || ||||| || | |||||| Sbjct 2511 AATAATTTACATCAATGATTTTGTTCAAATTTCT 2478 >seq116385 Length=1425 Score = 163 bits (180), Expect = 4e-35 Identities = 364/539 (68%), Gaps = 17/539 (3%) Strand=Plus/Minus Query 33307 GCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCG 33366 || || || ||||| || || ||||| ||| || ||||| ||||| || || | || Sbjct 583 GCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAACCA 524 Query 33367 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATT 33426 ||||| | || | ||| || | ||| || || | ||||| ||| ||||| || Sbjct 523 GGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACTTCCGCTGAAGAAAATG 464 Query 33427 CCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG------CTGTCATGT 33480 ||||| || |||||||| ||||| | |||||| || | |||| ||| || Sbjct 463 CCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCAAAGGTGGCGGATTTACTGCCA--- 407 Query 33481 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33540 ||||| ||||| || |||||||| || |||||||| | | || | || || Sbjct 406 ATCCAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAAGGTAGATTCTCGACAGCGTTG 347 Query 33541 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33600 ||||| ||| | |||| | ||| | |||| ||||| |||| ||| |||||| Sbjct 346 AAGAGGAAGTCTCTTTCCTGTGGATCGCGGATGTAAGAGTCGATTAAAATACTGTACATT 287 Query 33601 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33660 ||||| || | ||| || || || ||||| || || |||||||| | ||| || |||||| Sbjct 286 TCCGAGTGGACGTTCTCCATAGCAATCTGGAACCCATAGAAACAGCGAGCTTCAGTAATC 227 Query 33661 TGTACTT-CTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGC 33719 || |||| ||| ||| |||||| |||| |||||||| || || || || || || Sbjct 226 TGGACTTCCTGGGTGAAA-CGTTCCACCAAGTTTTCATTGACAATGCCATCGGAAGCGGC 168 Query 33720 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTATTCCAAT 33778 || || ||||| || || || || | || || || || || | || | ||| | Sbjct 167 GAAGAAAGCCAAAACGTGGGAAATGAAGTGCTTCTC-TCCGGAATTCAACTTCTCCCAGT 109 Query 33779 C--ATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33835 | ||| || || |||| ||| || || ||||| ||||| || || ||||| |||| Sbjct 108 CGGCTTG--GTCCTTGGATAGATCGACCTCCTCCACAGTCCAGAACGAAGCCTCCGCCT 52 >seq36631 Length=6711 Score = 82.4 bits (90), Expect = 9e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 28462 ATACCCAATTCTTTGACCTGAGTTAGTGATCTCCAATCCATGTTAGCGCTTCCTAAATAA 28521 || |||| ||| ||||| || || | |||||||| ||||||||||| ||||| | ||| Sbjct 1890 ATTCCCAGTTCCTTGACTTGCGTCAACGATCTCCAGTCCATGTTAGCACTTCCAATGTAA 1831 Query 28522 ATATGTGTATTATCAGATATCCAAAATTTTGTATGAAGAACTCCTCCT 28569 | ||| |||||||| ||||||| ||||| || | |||||| ||| Sbjct 1830 AAGTGTTGATTATCAGCAATCCAAAGCTTTGTGTGCAAAACTCCACCT 1783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622002041147640