Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq26001 134 1e-26 seq63354 131 2e-25 seq30215 129 6e-25 seq93051 84.2 2e-11 >seq26001 Length=10617 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||||||||| | || ||||| ||||| || ||||||||| Sbjct 8788 CCACCACGAAGACGAAGCACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAA 8729 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||| || || |||||||| ||| |||| || | ||||| || ||||| Sbjct 8728 AGAGTACGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGA 8669 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGC-TGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| |||||||| ||| | | |||| | | | ||| | |||||| | | || | Sbjct 8668 ATTCCCTCTTTGTC-TTGAATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTAC 8610 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||||||||| || || |||||||||||||| ||||| Sbjct 8609 TTCTAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGAAAATTTGCAT 8562 >seq63354 Length=4016 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| || || | ||| ||||||||||| |||||||| ||| | Sbjct 2000 CCACCACGGAGACGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAC 1941 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || | ||||| || ||| |||| ||||| || || || || ||| Sbjct 1940 AAGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGG 1881 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| |||||||| ||| || ||||| | || | || |||| | |||| Sbjct 1880 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGACT 1821 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| ||||| || || || || ||||| |||||||| Sbjct 1820 TCCAAGGTAATGGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCAT 1774 >seq30215 Length=1837 Score = 129 bits (142), Expect = 6e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 131023 AGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCC 131082 || || ||||| | || |||||||||||||| |||||||| || || || ||| Sbjct 1732 AGGACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATGTACGACCGTCT 1673 Query 131083 TCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCG 131142 || | ||||| || ||| |||| |||||||| ||||| ||||| || ||||||||||| Sbjct 1672 TCCAATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCT 1613 Query 131143 GTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTT 131202 ||||| ||||| | ||| | ||||||| | ||| | || | ||||| || Sbjct 1612 TGAATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTC 1553 Query 131203 TTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 ||||| || | ||| || |||||||||||||||| Sbjct 1552 TTACCAGTCAAAGTCTTGACGAAAATCTGCATGA 1519 >seq93051 Length=3786 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 145625 GCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTG--TATTGTACGATCT 145682 || || || || ||||| || ||||| | || || || |||| |||| ||| || | Sbjct 2237 GCTATGGATGCTAAATTGCAGACTGCGATTTCATC--CGGAGCTGAATATTCTACTATTT 2180 Query 145683 CGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGC 145742 | | ||| | |||||| ||||| ||||| || | ||||| |||||||||||||| || | Sbjct 2179 CTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCTATTAC 2120 Query 145743 ACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTC 145791 | || || || || | |||||| || ||||| || || || | ||| Sbjct 2119 AAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTC 2071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471296644479360