Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq30215 149 4e-31 seq63354 129 4e-25 seq26001 123 2e-23 seq63732 116 2e-21 seq16874 113 3e-20 >seq30215 Length=1837 Score = 149 bits (164), Expect = 4e-31 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 ||||||||||||||| ||||||||||||||||||||| ||||| ||| |||| || Sbjct 1729 ACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATGTACGACCGTCTTCC 1670 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 ||||| ||||| || || || | || ||||| || | || | ||||||||||| | Sbjct 1669 AATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGA 1610 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 ||||| ||| ||||||| || ||||| | ||||| || || ||||| || ||| Sbjct 1609 ATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCTTA 1550 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || ||||| || || ||||| ||||||||| Sbjct 1549 CCAGTCAAAGTCTTGACGAAAATCTGCATG 1520 >seq63354 Length=4016 Score = 129 bits (142), Expect = 4e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | |||||||||||| ||||| ||| ||||||||| || ||||| || | Sbjct 2002 TACCACCACGGAGACGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGG 1943 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| ||| |||| || ||||| ||||| || || || | ||||||||||| | | Sbjct 1942 ACAAGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTG 1883 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || |||||||| || || ||| ||||| | | || || | ||| | Sbjct 1882 GGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGA 1823 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||| || ||||| || | ||| || ||||| |||||||| Sbjct 1822 CTTCCAAGGTAATGGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCAT 1774 >seq26001 Length=10617 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||| ||||||||||| ||| ||||| ||||||||||| || Sbjct 8789 ACCACCACGAAGACGAAGCACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGA 8730 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 | | ||| |||| || | ||| || || || || || | | ||| ||||| | || Sbjct 8729 AAGAGTACGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGG 8670 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | || |||||||| ||| || || ||||||| || |||||| | ||| || Sbjct 8669 AATTCCCTCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTAC 8610 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 ||||| ||||| ||||||||||| | |||||| ||||| || ||||| Sbjct 8609 TTCTAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGAAAATTTGCAT 8562 >seq63732 Length=9904 Score = 116 bits (128), Expect = 2e-21 Identities = 72/77 (94%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4774 CTCTCTATTCAGAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCAT 4715 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 4714 GGTTATATTTAGCCTTA 4698 >seq16874 Length=9872 Score = 113 bits (124), Expect = 3e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| || | || || || || ||||| | || || || ||||| |||||||| Sbjct 4260 ATGGGTTCCGTCAATGTTAACCGCAATGTTACTGATATTTTTTATCGCTATAAAATGCCC 4201 Query 6222 CGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATG 6281 | ||| ||||| || || || ||||| || || || ||||| || |||||||||||| Sbjct 4200 AGAATCACAGCCAAAGTAGAAGGCAAGGGCAATGGAATCAAAACTGTTATTGTCAACATG 4141 Query 6282 CCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGTGC 6341 | ||||| || || || | |||||||| || || || | || |||||||| || ||| Sbjct 4140 GCCGAAGTAGCCAAAGCCATAGGACGCCCAGCTACATATACAACCAAATATTTTGGATGC 4081 Query 6342 GAACTTGGCGCTCAGACGCAGTTTGAT 6368 ||| | || ||||| || || || ||| Sbjct 4080 GAATTGGGAGCTCAAACTCAATTCGAT 4054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334451710408949