Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq116385 264 1e-65 seq23435 129 7e-25 seq18648 127 2e-24 >seq116385 Length=1425 Score = 264 bits (292), Expect = 1e-65 Identities = 386/546 (71%), Gaps = 0/546 (0%) Strand=Plus/Minus Query 93079 ATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATT 93138 || |||||| | | |||||||| || | |||||||| | || || | ||||| Sbjct 599 ATGGTACATCATGACGGCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATT 540 Query 93139 GCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACT 93198 | ||| || ||||| || | || || | ||||| | ||| || || | || ||||| Sbjct 539 GGAGAAGGTCAAACCAGGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACT 480 Query 93199 ACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGC 93258 || || || || ||||| ||||| ||||| || | || | |||||||| | || Sbjct 479 TCCGCTGAAGAAAATGCCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCAAAGGTGGC 420 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 ||| ||||||| ||||| || ||||| || || || ||||| | ||||||||| | Sbjct 419 GGATTTACTGCCAATCCAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAAGGTAGATT 360 Query 93319 TTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAA 93378 |||| |||||| || ||| | |||| || | | ||| || ||||| | |||||||| Sbjct 359 CTCGACAGCGTTGAAGAGGAAGTCTCTTTCCTGTGGATCGCGGATGTAAGAGTCGATTAA 300 Query 93379 CAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCT 93438 | | |||||||| || ||||| |||||||| ||||| ||||| || |||||||| | Sbjct 299 AATACTGTACATTTCCGAGTGGACGTTCTCCATAGCAATCTGGAACCCATAGAAACAGCG 240 Query 93439 AGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACC 93498 |||||| || ||||| ||||| || | || | || || | ||||||||||| || || Sbjct 239 AGCTTCAGTAATCTGGACTTCCTGGGTGAAACGTTCCACCAAGTTTTCATTGACAATGCC 180 Query 93499 ATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAG 93558 |||||| || || || |||||||| | || || || || ||||| | || | Sbjct 179 ATCGGAAGCGGCGAAGAAAGCCAAAACGTGGGAAATGAAGTGCTTCTCTCCGGAATTCAA 120 Query 93559 CTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGC 93618 ||| ||||| |||| | | || || || |||||||| || || |||||||| ||||| || Sbjct 119 CTTCTCCCAGTCGGCTTGGTCCTTGGATAGATCGACCTCCTCCACAGTCCAGAACGAAGC 60 Query 93619 TTCTGC 93624 || || Sbjct 59 CTCCGC 54 >seq23435 Length=33132 Score = 129 bits (142), Expect = 7e-25 Identities = 82/88 (93%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 5646 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAG 5705 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||||| Sbjct 5706 CGTGGGTTCGAACCCCACACCTGACAAA 5733 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 4926 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAG 4985 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||| Sbjct 4986 CGTGGGTTCGAACCCCACACCTGACAA 5012 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 5106 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAG 5165 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||| Sbjct 5166 CGTGGGTTCGAACCCCACACCTGACAA 5192 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 5286 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAG 5345 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||| Sbjct 5346 CGTGGGTTCGAACCCCACACCTGACAA 5372 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 5466 CAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAG 5525 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||||| Sbjct 5526 CGTGGGTTCGAACCCCACACCTGACAA 5552 Score = 123 bits (136), Expect = 3e-23 Identities = 79/85 (93%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 ||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| Sbjct 4768 GTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGCG 4827 Query 126324 TGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||||| Sbjct 4828 TGGGTTCGAACCCCACACCTGACAA 4852 >seq18648 Length=22380 Score = 127 bits (140), Expect = 2e-24 Identities = 81/87 (93%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||||| |||||| Sbjct 19460 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGGAGC 19401 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||| Sbjct 19400 GTGGGTTCGAACCCCACACCTGACAAA 19374 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556015909911960