Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq26001 116 3e-21 seq63354 114 1e-20 seq30215 107 2e-18 >seq26001 Length=10617 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| | || |||||||| | || || ||||| ||| | | Sbjct 8562 ATGCAAATTTTCGTAAAAACCCTCACGGGTAAAACCATTACCCTAGAAGTAGAACCTTCG 8621 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| || ||||||||||| ||||| ||||| || ||||| Sbjct 8622 GATACTATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 8681 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || || ||||| || | || || ||| || | ||||||||||| Sbjct 8682 CAAAGATTGATCTTCGCTGGCAAGCAACTTGAAGACGGCCGTACTCTTTCCGATTACAAT 8741 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || |||||||| || || | |||||||| Sbjct 8742 ATCCAAAAAGAGTCTACTCTTCATTTAGT 8770 >seq63354 Length=4016 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || ||||| || | || | ||||| ||| | || Sbjct 1774 ATGCAGATCTTCGTCAAGACCCTTACTGGTAAGACCATTACCTTGGAAGTCGAACCTTCC 1833 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || |||||||| ||||| || ||||| |||||| Sbjct 1834 GACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCAA 1893 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||| | || || || || || || || || || |||||| | ||||| |||||| Sbjct 1894 CAACGTTTGATCTTCGCTGGAAAGCAATTGGAAGACGGACGCACCTTGTCCGACTACAAC 1953 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| || |||||| | || || || ||||| | || || ||| Sbjct 1954 ATCCAAAAGGAGTCCACCCTTCACTTGGTGTTGCGTCTCCGTGGTGGT 2001 >seq30215 Length=1837 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || ||||| || ||||| || | || | || || || | || Sbjct 1521 ATGCAGATTTTCGTCAAGACTTTGACTGGTAAGACAATTACCTTGGAGGTTGAGCCTTCC 1580 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || |||| |||||||||||||| || |||||||| || || ||| Sbjct 1581 GATACCATCGAGAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCTCCAGACCAA 1640 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || || || || || || || | || |||||||| Sbjct 1641 CAGCGTTTGATCTTCGCTGGAAAGCAATTGGAAGACGGTCGTACATTGTCAGATTACAAT 1700 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 |||||||| || ||||| | ||||| || Sbjct 1701 ATTCAAAAGGAGTCCACTCTTCATTTGGT 1729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419107093615135