Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq27445 114 1e-20 >seq27445 Length=3274 Score = 114 bits (126), Expect = 1e-20 Identities = 424/654 (65%), Gaps = 14/654 (2%) Strand=Plus/Minus Query 20174 GGCTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGT 20233 || || | ||| |||||||||| || | |||||| | | |||| ||| || || | | Sbjct 2912 GGATCCAGATGGTTTTTGTAGATATGAGTATCTCCAATATTATGAACAAAGTCGCCAGTT 2853 Query 20234 CTAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAA 20293 | | |||| ||||||||||| ||| || || || | || ||| |||||||| || || Sbjct 2852 TTCAAACCACAAACATGAGCAATCATGTATGTCAATAAGGCATAACTGGCAATATTGAAT 2793 Query 20294 GGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCA 20353 || ||||| | ||| || || || | | |||||| || ||| || | ||| || Sbjct 2792 GGCACTCCAAGACCAATATCCCCAGCACGCTGATAAAGTGAACAAGACAACTCGTTATCC 2733 Query 20354 GCTACATAAAATTG-ACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGC 20412 | ||| | ||||| || | ||| ||||| ||||| | ||||| | | ||| | Sbjct 2732 TCCACAAAGAATTGGACGAAGCAA-TGACATGGCGGTAAAGCCATTTTTGGAATATCCAC 2674 Query 20413 CGGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTAT----TAAAT 20468 || ||||| | |||| |||||||| ||| |||||||||||||| | ||| Sbjct 2673 AGGATTCCAGGACGACATGCAGATTCTTCGGTCGGTTGGATTATTTTTTATAGTGTTAAT 2614 Query 20469 CCACAATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGT-CCACG 20527 ||| | | | || || | || || || |||| ||| ||| || | | Sbjct 2613 -AACATTTT---TAAGCTGATCCACTCCTTGACCCATATAATCATCAT-GGCATGTTTTG 2559 Query 20528 TACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTT 20587 ||| | || ||||| | | |||||| ||||| ||||| || || | || || || | Sbjct 2558 TACTCAGCTCCAAAATAACGCCACTGAAAACCATAAACCGGACCTAGGTCACCTTCTTCT 2499 Query 20588 CTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTG 20647 || | | | |||| | | | || ||||| || | || ||| ||||| || || Sbjct 2498 CTATCAGTTAATCCGCACTTGTCTAGAAACTCTCTTGTGCTGTTTCCTTCCCAAATTTTA 2439 Query 20648 A-CTCCTGTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTC 20706 | | | ||| | | | | | | |||||||| || || | ||||| | ||||| Sbjct 2438 ATATTTTTTTCCTTCAGGAT-CTTTGAGTCAGTTTGTCCTTTAACGAACCACAAGAGCTC 2380 Query 20707 TTGCACTACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCAG 20766 || | | || ||| |||||| || ||||||||||| || ||||| || | | || Sbjct 2379 TTCCGCCACAGCTCTCCAAAAAACTTTCTTTGTGGTTAACAAAGGAAACTGATTTCTTAG 2320 Query 20767 ACTATACCTGGCCTGCATGCCAAATAGAGAGAGGGTGCCTATGCCGGTGCGGTC 20820 | || |||| || | ||||| | || |||| || | ||| |||||||| Sbjct 2319 ATTAAACCTCATATGACTTCCAAAAATCGATCGGGTTCCAACGCCAGTGCGGTC 2266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440703132636360