Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq63354 150 4e-31 seq30215 122 2e-22 seq26001 118 2e-21 >seq63354 Length=4016 Score = 150 bits (166), Expect = 4e-31 Identities = 172/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | | || | |||| ||| || |||||||| || ||||||| Sbjct 2000 CCACCACGGAGACGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAC 1941 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | |||||||||||||| ||||| ||||| |||||||||| ||| |||||| |||| Sbjct 1940 AAGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGG 1881 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| ||||| || ||||| || || || || ||||| || | ||| | ||| ||| Sbjct 1880 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGACT 1821 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || | || || ||||| || || || ||||||||||| ||||||||| || Sbjct 1820 TCCAAGGTAATGGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCATTCTG 1770 >seq30215 Length=1837 Score = 122 bits (134), Expect = 2e-22 Identities = 159/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 || || | ||||| ||| || ||||| ||||| || || | | || || |||||| Sbjct 1732 AGGACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATGTACGACCGTCT 1673 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || ||||| ||||| |||||||||| ||||||||| ||||| || |||||||| Sbjct 1672 TCCAATTGCTTTCCAGCGAAGATCAAACGCTGTTGG---TCTGGAGGAATACCTTCTTTG 1616 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || ||||| || || || || || || | |||| | || || || | || || Sbjct 1615 TCTTGAATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATT 1556 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| || |||| |||||||||||| |||||||| ||| Sbjct 1555 GTCTTACCAGTCAAAGTCTTGACGAAAATCTGCATGATG 1517 >seq26001 Length=10617 Score = 118 bits (130), Expect = 2e-21 Identities = 168/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | ||||| || |||||||||||||| || |||| Sbjct 8788 CCACCACGAAGACGAAGCACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAA 8729 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || || |||||||| | ||| || || |||||||||| | || || |||| Sbjct 8728 AGAGTACGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGCTG---ATCTGGA 8672 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||| || || || || ||||| || || || |||| ||| | |||| Sbjct 8671 GGAATTCCCTCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCT 8612 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 ||||| || || || || || || || || || || ||||| || |||||| ||| Sbjct 8611 ACTTCTAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGAAAATTTGCATTCTGT 8557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177819838709962