Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq26001 116 4e-21 seq63354 113 4e-20 seq30215 113 4e-20 >seq26001 Length=10617 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || | ||| ||||| | |||||||||||||| |||||||||||| Sbjct 8791 GCACCACCACGAAGACGAAGCACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCG 8732 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || || || || || || |||||| ||||||||| |||||||| ||| Sbjct 8731 GAAAGAGTACGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGA 8672 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 || || ||||| |||| | ||| | | || || | | |||| || |||| | || Sbjct 8671 GGAATTCCCTCTTTGT-CTTGAATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTC 8613 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| | ||| | ||||| || || || |||||||| ||||| ||||| Sbjct 8612 TACTTCTAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGAAAATTTGCAT 8562 >seq63354 Length=4016 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||||||||| || | || ||||| ||||| || ||||| ||| | Sbjct 2000 CCACCACGGAGACGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAC 1941 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || | || ||||||||| ||||||| || || ||||| || || Sbjct 1940 AAGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGG 1881 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||| ||||| ||| || ||||| | ||| | |||||| | | |||||| Sbjct 1880 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGACT 1821 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || || || || || || |||||||| Sbjct 1820 TCCAAGGTAATGGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCAT 1774 >seq30215 Length=1837 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || ||||| ||||||||||||||||| || || ||| || || Sbjct 1729 ACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATGTACGACCGTCTTCC 1670 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | || ||||||||| ||||||| ||||| || || ||||| || || || ||||| Sbjct 1669 AATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGA 1610 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||||| | |||| ||| || | | ||| || || | ||| | || || Sbjct 1609 ATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCTTA 1550 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || |||| ||| || || |||||||||||| Sbjct 1549 CCAGTCAAAGTCTTGACGAAAATCTGCATG 1520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474779352354960