Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq93051 168 6e-37 seq30215 109 5e-19 seq63354 104 2e-17 seq26001 104 2e-17 >seq93051 Length=3786 Score = 168 bits (186), Expect = 6e-37 Identities = 543/843 (64%), Gaps = 0/843 (0%) Strand=Plus/Plus Query 123834 AATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAAT 123893 |||||||||||||| || ||||| |||| |||||| ||| ||||| || ||| Sbjct 2481 AATTTGAACAAAATCATTGATGTAAATTATTATCCATTGCCAGAAGCTAAGAAATCGAAT 2540 Query 123894 TTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTG 123953 ||| ||| ||||| | || | || ||||||| || | || || || | || || Sbjct 2541 TTGCGACATAGACCTATAGGTATTGGTGTTCAAGGATTTTCTGATGCTTTGATTATTATG 2600 Query 123954 CGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATT 124013 || | || || |||||| | ||||| | ||| | || ||||| ||||||||| Sbjct 2601 CGTTTTCCTTATGAAAGCAAAGAAGCTCAATTGTTGAACCAACAAATTTTTGAAACAATT 2660 Query 124014 TATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGT 124073 || || || ||| | || || || || ||||| || ||| | || | || |||| Sbjct 2661 TACTATGGAGCTCTTGAAGCTAGTTGTGAACTGGCTGAAAAGGATGGACCATATGAAACA 2720 Query 124074 TACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCG 124133 || | || || || | ||| ||| ||| | ||||| || |||||| || || || Sbjct 2721 TATGAAGGAAGTCCAGTAAGCAAAGGAATTCTCCAGTATGATATGTGGGATAAAACTCCA 2780 Query 124134 ACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAAC 124193 || | || ||||||||| | || ||| || ||| ||| || | | ||| Sbjct 2781 ACCGACTTATGGGACTGGCAAGCATTGAAAGAAAAGATAAAATTGCATGGCGTAAGAAAC 2840 Query 124194 TCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAA 124253 || || || | || ||||| || || |||| ||||||||||| || || || ||| Sbjct 2841 TCCCTATTACTTGCTCCAATGCCTACAGCGTCCACAGCTCAAATTTTGGGTAATAATGAA 2900 Query 124254 TCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAA 124313 ||||||||||| | ||| ||| | || || |||| ||| | || || || || Sbjct 2901 TCCTTCGAGCCATACACATCTAATATTTATAACCGCAGAGTCTTATCTGGAGAGTTCCAG 2960 Query 124314 GTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATG 124373 ||| | |||||||| || || | || ||| || || || | | ||||| | ||| Sbjct 2961 GTGGTTAATCATCACTTATTGAAAGATTTGACGGAAATAGATCTATGGGATGATGATATG 3020 Query 124374 CGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACAC 124433 |||||||| ||| | |||| | || || | ||||| | | | Sbjct 3021 AAGAACGAAATCATTTCTAAACGTGGTTCTATTCAAGAAATAGACAGAATTCCCGCAAAT 3080 Query 124434 GTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATTAATTGAAATGGCC 124493 | | || |||||||| || |||||||| | ||| || |||| ||||||| Sbjct 3081 ATACGTGAGCTTTACAAAACTGTTTGGGAAATCTCTATCAAAGCATCAATTCAAATGGCT 3140 Query 124494 GTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCC 124553 | || || || || | || || |||||||| || |||||| | |||||||||||| Sbjct 3141 GCTGATCGTGGTGCTTTCATTGACCAAAGTCAGTCATTTAACATTCATGTAGCGGAACCA 3200 Query 124554 ACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAACGGGC 124613 | || | | || || || | | || |||| ||| || ||||| || Sbjct 3201 AATTATGGAAAGCTCACATCAATGCATTTTTATGCATGGAAACTCGGGCTTAAAACTGGT 3260 Query 124614 ATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAAATCT 124673 |||||||| || | || || || || || |||| ||||| ||||| || || ||| | Sbjct 3261 ATGTATTATTTGCGTACTAAGCCCGCAGCTAATGCTATTCAGTTTACTGTTGATAAAAGT 3320 Query 124674 AAA 124676 ||| Sbjct 3321 AAA 3323 >seq30215 Length=1837 Score = 109 bits (120), Expect = 5e-19 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 45137 ATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGTCCAAT 45194 ||| || || || |||||||| ||||| ||||| |||| | | || || |||||| Sbjct 1724 ATGAAGAGTGGACTCCTTTTGAATATTGTAATC--TGACAATGTACGACCGTCTTCCAAT 1667 Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || ||||| ||| | ||||| || || ||||| || ||||| |||||||| ||||||||| Sbjct 1666 TGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGAATT 1607 Query 45255 TTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCG 45314 || |||| || | ||| ||||||| ||| || || | |||| || || || Sbjct 1606 TTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCTTACCA 1547 Query 45315 GTTAGAGTTTTTACAAAAATTTGCAT 45340 || | ||| || || ||||| ||||| Sbjct 1546 GTCAAAGTCTTGACGAAAATCTGCAT 1521 >seq63354 Length=4016 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | |||||| | || || || || ||||||||||| || || ||| Sbjct 2003 ATACCACCACGGAGACGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCG 1944 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || |||||||| ||||| ||| | ||||| ||||| || || || Sbjct 1943 GACAAGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGT 1884 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || ||||| ||||| || || |||| ||| | ||||||||||| ||| Sbjct 1883 GGGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCG 1824 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | |||| || || || || || || || || || || ||||| Sbjct 1823 ACTTCCAAGGTAATGGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCAT 1774 >seq26001 Length=10617 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||||| ||| || || || || ||||||||||| |||||| | || || || Sbjct 8771 CACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTACGGCCGTCTTC 8712 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||| || || ||| | ||||||| |||||| || || ||||| || ||||| ||||| Sbjct 8711 AAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTG 8652 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || ||| | || | || || |||| || ||||| || |||| ||||| Sbjct 8651 AATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTACTTCTAGGGTAATGGTTTT 8592 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||||||| ||||||||||| Sbjct 8591 ACCCGTGAGGGTTTTTACGAAAATTTGCAT 8562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451317403794840