Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq30215 118 2e-21 seq63354 114 3e-20 seq26001 100 7e-16 >seq30215 Length=1837 Score = 118 bits (130), Expect = 2e-21 Identities = 162/224 (72%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 199406 TATCG-AAGTCTCA--GGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCC 199462 ||||| ||| |||| |||| | || ||||| ||||||||||| | ||||| || | | Sbjct 1747 TATCGGAAGGCTCANAGGACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGAC 1688 Query 199463 AAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAA 199522 || || | || ||||||| |||||||| |||||||| | |||||| ||||| ||| | Sbjct 1687 AATGTACGACCGTCTTCCAATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGA 1628 Query 199523 ATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACA 199582 || |||||| || ||||| || ||| || |||| ||| || | | || || Sbjct 1627 ATACCTTCTTTGTCTTGAATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACC 1568 Query 199583 TCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || |||||||| || | ||| || || ||||| || Sbjct 1567 TCCAAGGTAATTGTCTTACCAGTCAAAGTCTTGACGAAAATCTG 1524 >seq63354 Length=4016 Score = 114 bits (126), Expect = 3e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 199426 GTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTG 199485 ||| || || ||||||||||||| ||||||||| | ||| || | ||| ||||||| || Sbjct 1977 GTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCCGTCTTCCAATTG 1918 Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 |||||| |||||||| | ||| || || || || ||||| ||| || || ||||| Sbjct 1917 CTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCTTTGTCTTGGATCTT 1858 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 ||| || ||| | |||||| | | ||| || ||||| || || |||||||| || Sbjct 1857 GGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGACTTCCAAGGTAATGGTCTTACCAGT 1798 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 || || || || || || || Sbjct 1797 AAGGGTCTTGACGAAGATCTG 1777 >seq26001 Length=10617 Score = 100 bits (110), Expect = 7e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | || ||||| ||||| ||||||| ||||| || | | ||| Sbjct 8782 CGAAGACGAAGCACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTA 8723 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || ||||| || ||||| || |||||||| | | ||||| || ||| |||||| Sbjct 8722 CGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCC 8663 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| || |||||||| || || |||| || || | | |||||| || | Sbjct 8662 TCTTTGTCTTGAATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTACTTCTAGG 8603 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||||||||| ||||| || |||||||| Sbjct 8602 GTAATGGTTTTACCCGTGAGGGTTTTTACGAAAATTTG 8565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177088178337393