Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq116385 230 2e-55 seq63354 116 4e-21 seq26001 107 2e-18 >seq116385 Length=1425 Score = 230 bits (254), Expect = 2e-55 Identities = 388/557 (70%), Gaps = 6/557 (1%) Strand=Plus/Minus Query 132874 ACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATG 132933 ||||| || | | |||||| | |||||||| || || | || |||||||| || || Sbjct 607 ACCAAGTGATGGTACATCATGACGGCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATA 548 Query 132934 AGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCG 132993 ||||| ||| ||| ||||| || ||||| | || | || || | ||| || || ||| Sbjct 547 AGTTCATTGGAGAAGGTCAAACCAGGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCG 488 Query 132994 GCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCG 133053 |||||||| || ||||| | ||| || ||||| || ||||| | | | |||| | Sbjct 487 GCGAAACTTCCGCTGAAGAAAATGCCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCA 428 Query 133054 AACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCAC 133113 || ||||| ||| ||| | ||||| || ||||| || ||||| | || || || Sbjct 427 AAGGTGGCGGATTTACTGCCAATCCAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAA 368 Query 133114 GGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGG 133171 || | | |||| ||||| || | | ||| ||| | | | ||| ||| | ||| | Sbjct 367 GGTAGATTCTCGACAGCGTTGAAGAG--GAAGTCTCTTTCCTGTGGATCGCGGATGTAAG 310 Query 133172 TGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGT 133231 |||||| | | |||||||||||||| ||||||||||| || || || || || | Sbjct 309 AGTCGATTAAAATACTGTACATTTCCGAGTGGACGTTCTCCATAGCAATCTGGAACCCAT 250 Query 133232 AAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGT 133291 | || || || || || | ||| ||||| || | |||||| || |||| ||||| | Sbjct 249 AGAAACAGCGAGCTTCAGTAATCTGGACTTCCTGGGTGAAACGTTCCACCAAGTTTTCAT 190 Query 133292 TGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGT 133351 |||| ||||| ||| |||||||| || |||| ||||| ||||| || ||| Sbjct 189 TGACAATGCCATCGGAAGCGGCGAAGAAAGCCAAAACGTGGGAAATGAAGTGCTTCTCTC 130 Query 133352 TGTCGTTCAAGCGCTCCCAGTCGCGCGT-GTCCTTGGACAGGTCCACCTCCTCGACGGTC 133410 | ||||| |||||||||| || | ||||||||| || || |||||||| || ||| Sbjct 129 CGGAATTCAACTTCTCCCAGTCG-GCTTGGTCCTTGGATAGATCGACCTCCTCCACAGTC 71 Query 133411 CAAAACGACGCCTCGGC 133427 || ||||| ||||| || Sbjct 70 CAGAACGAAGCCTCCGC 54 Score = 95.1 bits (104), Expect = 1e-14 Identities = 211/317 (67%), Gaps = 0/317 (0%) Strand=Plus/Minus Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGC 132780 || ||||| || ||||| || || ||||| || |||||| || || || | || | Sbjct 927 AGAAGCCTATCAGCCACAAATTCAATGTACTGGGACATGAGGTCACAGTTCATGCCGATG 868 Query 132781 AGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACG 132840 || || ||||| |||| || | || ||| || || || || ||| || | Sbjct 867 AGGTTGACGGGCAGGGCTTTAGTCAAGAATTCTTGTTCAATTTTAACAGCATCGAGGATG 808 Query 132841 ATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCA 132900 ||||| | | | || | |||| ||| ||||| || | | |||||| | ||| Sbjct 807 ATTTCGCGGATTCTGTCCTTGGATGGCCTTTGGACCAAGTGATGGTACATCATGACGGCA 748 Query 132901 AAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGC 132960 ||||| || || | || |||||||| || || ||||| ||| ||| ||||| || ||| Sbjct 747 AAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAACCAGGC 688 Query 132961 ATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCC 133020 || | || | || || | ||| || || ||||||||||| || ||||| | ||| Sbjct 687 ATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACTTCCGCTGAAGAAAATGCCT 628 Query 133021 TCGACGGCCGCGAAAGC 133037 || || || || ||||| Sbjct 627 TCAACAGCGGCAAAAGC 611 >seq63354 Length=4016 Score = 116 bits (128), Expect = 4e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || || || ||||| ||| | || ||||| | | Sbjct 1773 AATGCAGATCTTCGTCAAGACCCTTACTGGTAAGACCATTACCTTGGAAGTCGAACCTTC 1832 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | ||| | || | || |||| |||||||||||||| || | || || Sbjct 1833 CGACACCATTGAAAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCAGATCA 1892 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | ||| || || || |||| |||| |||||| | ||||||||| Sbjct 1893 ACAACGTTTGATCTTCGCTGGAAAGCAATTGGAAGACGGACGCACCTTGTCCGACTACAA 1952 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || |||||| ||||| Sbjct 1953 CATCCAAAAGGAGTCCACCCTTCACTTGGTGTTGCGT 1989 >seq26001 Length=10617 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||||||||| |||||||| |||||||| ||| | || || || | | Sbjct 8561 AATGCAAATTTTCGTAAAAACCCTCACGGGTAAAACCATTACCCTAGAAGTAGAACCTTC 8620 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||||| || || | ||||||||||||||||| | || || Sbjct 8621 GGATACTATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCA 8680 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | | || | ||| ||||| || || || |||| || || || ||| ||||| Sbjct 8681 GCAAAGATTGATCTTCGCTGGCAAGCAACTTGAAGACGGCCGTACTCTTTCCGATTACAA 8740 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| || | || || ||||| ||||| ||| Sbjct 8741 TATCCAAAAAGAGTCTACTCTTCATTTAGTGCTTCGT 8777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499413919071360