Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq26001 179 8e-40 seq30215 172 1e-37 seq63354 149 1e-30 >seq26001 Length=10617 Score = 179 bits (198), Expect = 8e-40 Identities = 162/204 (79%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||||||||| ||||||||||||| |||||| | || ||||| || ||| Sbjct 8764 TGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTACGGCCGTCTTCAAGTTGC 8705 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | || ||| || ||||||||||| || |||||||||||||| || Sbjct 8704 TTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTG 8645 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || ||||| || || |||||| ||| ||||| ||||||| || || || || Sbjct 8644 GCTTTAACATTCTCGATAGTATCCGAAGGTTCTACTTCTAGGGTAATGGTTTTACCCGTG 8585 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||||||||||| | ||||||| Sbjct 8584 AGGGTTTTTACGAAAATTTGCATT 8561 >seq30215 Length=1837 Score = 172 bits (190), Expect = 1e-37 Identities = 160/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||||||||| ||||||||||||||||| | | || | || ||||| | ||| Sbjct 1723 TGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATGTACGACCGTCTTCCAATTGC 1664 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || |||||||| | || ||||||||||||||||| |||||||||||||||||||| Sbjct 1663 TTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGAATTTTA 1604 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| ||||| ||||| || ||| || || || | ||||| ||||| || ||| Sbjct 1603 GCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCTTACCAGTC 1544 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | ||||| Sbjct 1543 AAAGTCTTGACGAAAATCTGCAT 1521 Score = 100 bits (110), Expect = 6e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 |||| | ||||| || |||||||| | || ||||||||||||||||| |||||||||| Sbjct 1837 CTTCCAATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGT 1778 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAA 195084 |||||||||| |||||| ||||| ||||| || ||| Sbjct 1777 CTTGAATTTTAGCCTTGACATTCTCGATGGTATCGGAA 1740 >seq63354 Length=4016 Score = 149 bits (164), Expect = 1e-30 Identities = 167/221 (76%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTC 194980 ||| | ||| || | |||||| |||||||| ||||| || ||||| |||| |||| || | Sbjct 1992 GAGACGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAG-GTGC 1934 Query 194981 TCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTT 195040 || ||||| | ||||| || |||||||| | |||||||| ||||| || || || | Sbjct 1933 GTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCT 1874 Query 195041 CTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGG 195100 |||||||||| || || |||||| || ||||||||||| ||| ||| ||||| | || Sbjct 1873 CTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGACTTCCAAGG 1814 Query 195101 TAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| ||||| || || | || || ||||| | |||||| Sbjct 1813 TAATGGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCATT 1773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107756169233693