Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq93051 315 8e-81 seq116385 167 3e-36 >seq93051 Length=3786 Score = 315 bits (348), Expect = 8e-81 Identities = 653/969 (67%), Gaps = 6/969 (1%) Strand=Plus/Minus Query 47879 TGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTC 47938 |||||| ||||||| ||| || || || | |||| ||| | ||||| || |||||| Sbjct 2238 TGCTATGGATGCTAAATTGCAGACTGCGATTTCATCCGGAGCTGAATATTCTACTATTTC 2179 Query 47939 AGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACA 47998 | || ||||| | ||||| || ||||| | ||||| |||||| | | ||||| Sbjct 2178 TGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTACTTTTCCTATTACA 2119 Query 47999 TGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTT 48058 || || || || | ||| | || || |||||||| | || || || || || | Sbjct 2118 AGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGACTCGATTATGGCAAA 2059 Query 48059 CCAAACAGTCCT-AGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTAT 48117 ||| | | | | ||| || || | ||||||| || | |||||||| | Sbjct 2058 CCACA-ATTGTTGAGCTTTAATTTTACGGTTAGCTTTTCCCTCCTTCTCGTATTTTACGT 2000 Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACA 48177 | | |||||||| || || || | |||| || || ||| ||||||| || ||||||| Sbjct 1999 AGAGATTCTCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACATTTATGGGGACACA 1940 Query 48178 TCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAG 48237 |||||||||||||||||||| || ||| | |||| |||| ||| || ||||| | || Sbjct 1939 TCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATCGGGAATCCATAAAG 1880 Query 48238 CTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAA 48297 | ||||| ||| || | || || || || || || |||| | || | || | || Sbjct 1879 CATAAAATAGATCTCTTGCTCGGAGCTCATCTTTACCTGTATTTTTCTTCAAGTCTAAAA 1820 Query 48298 AGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTAT 48357 | || | ||||||| ||||||||| |||||||| || || | | || |||| ||||| Sbjct 1819 ATTCAAAAATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAGCTCCGGGTCTTTTAT 1760 Query 48358 TACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATAC 48417 | || || ||||| | |||| | ||| || || | ||||| | ||| || || | || Sbjct 1759 TTCCACCCTGATCCACATATTTTGCAACGTTATTGAACACTCTAAGCATAGGTACTAAAC 1700 Query 48418 CATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTAT--ATTACTAAT 48475 | || || | ||||| ||||| | ||| | | || |||| | || | | | || Sbjct 1699 CGTTAGAAGTGCCATTAGTTCCTGCTATAGTAGTGCCTTTAGCACGAATGCAATGCACAT 1640 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 | ||||| || || || || ||||| || | || || ||| | | | | | Sbjct 1639 T--TATACCAATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTTCGACTGATTTAAA 1582 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATG 48595 |||||||| || ||| ||| |||| |||||||| || | ||| || | Sbjct 1581 GATTCCTTCAATTGAGTCAGAGCACATTGTTAAGAGAAAACAGGATGATAGTTGAGGGCG 1522 Query 48596 ACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAA 48655 | || ||| || | || || || ||||| ||||| || | |||||||| | Sbjct 1521 AGGTGTAGCTGCCGCGAACAGGGTAGGTGAAGCATGGATAAAATATCTTTCTGATAAAAG 1462 Query 48656 TTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCAT 48715 |||||||| || ||| | ||||| ||||| | ||| || |||| || || | ||| Sbjct 1461 GTTATATGTCTCTATAGCTGAATCAATATCATTTCCATGAATTCCTACGGACACTCTCAT 1402 Query 48716 TAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTC 48775 | ||| | ||| |||||||| | |||||| |||||||||||| | ||| || ||| Sbjct 1401 AAGCATGTGTTGTGGTCTTTCGGCGATTTTGCCATTTATTTTCAATAAATAAGAGCGTTC 1342 Query 48776 CAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAATTGATGAATT 48835 ||| || ||||| ||||| ||||||||| ||| || |||||| |||||| |||||||| Sbjct 1341 CAAGGTCTTAAATCCAAAGTAGTTGTATCCAAAATCCCTATCATAAATAATAGATGAATT 1282 Query 48836 TATTCTTTC 48844 | ||| || Sbjct 1281 CAATCTATC 1273 Score = 293 bits (324), Expect = 3e-74 Identities = 566/836 (68%), Gaps = 13/836 (2%) Strand=Plus/Minus Query 46973 TTTTTCCACAGTAAACTTAATTGGATTACTCGCTGATTTTGTTCGTAAATAATACATACC 47032 ||| || |||||||||| ||| | |||| || | || || || |||||||||||||| Sbjct 3317 TTTATCAACAGTAAACTGAATAGCATTAGCTGCGGGCTTAGTACGCAAATAATACATACC 3258 Query 47033 AGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGG 47092 ||| || | || | ||||| |||| |||||||| || | || |||| | || Sbjct 3257 AGTTTTAAGCCCGAGTTTCCATGCATAAAAATGCATTGATGTGAGCTTTCCATAATTTGG 3198 Query 47093 TTCTGAAATATGAATATTAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGC 47152 ||| | | |||||| |||| || ||||| || ||||| || ||||| | |||||| || Sbjct 3197 TTCCGCTACATGAATGTTAAATGACTGACTTTGGTCAATGAAAGCACCACGATCAGCAGC 3138 Query 47153 CATATCTAAAATAACCCTTTG--TGGTATCTCCCATACTGTTTTATAAATTTGTTTAATG 47210 | || | || | | ||||| | || ||||| || ||||| |||| | || Sbjct 3137 C--ATTTGAATTGATGCTTTGATAGAGATTTCCCAAACAGTTTTGTAAAGCTCACGTATA 3080 Query 47211 TCTTCTGGGAGATTAG--TATT--TTGAATAGATCCTCCgttttctataattttgttttt 47266 | || |||| | | |||| ||||||||| || | || || |||| ||| || Sbjct 3079 T-TTGCGGGAATTCTGTCTATTTCTTGAATAGAACCACGTTTAGAAATGATTTCGTTCTT 3021 Query 47267 taattcatttgaccaaagttttcgttcagttaatgtttttaaAAGATGAGGATTAACAAT 47326 | |||| ||| || | | ||| || || ||| || | ||| ||||||| | Sbjct 3020 CATATCATCATCCCATAGATCTATTTCCGTCAAATCTTTCAATAAGTGATGATTAACCAC 2961 Query 47327 TTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGA 47386 || || |||||||||| ||||| ||| |||| |||||| ||| ||||| || | || Sbjct 2960 CTGGAACTCTCCAGATAAGACTCTGCGGTTATAAATATTAGATGTGTATGGCTCGAAGGA 2901 Query 47387 TTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCT 47446 ||||||||| || ||||||||||| || || ||||||||||| | |||| ||||| | Sbjct 2900 TTCATTATTACCCAAAATTTGAGCTGTGGACGCTGTAGGCATTGGAGCAAGTAATAGGGA 2841 Query 47447 ATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAAAGATCTGA 47506 |||||||| |||| || ||||| || ||| ||||| | || | Sbjct 2840 GTTTCTTACGCCATGCAATTTTATCTTTTCTTTCAATGCTTGCCAGTCCCATAAGTCGGT 2781 Query 47507 TGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAACCATTATA 47566 |||| || ||| | |||||| || ||||||||||| |||| ||| || | ||| Sbjct 2780 TGGAGTTTTATCCCACATATCATACTGGAGAATTCCTTTGCTTACTGGACTTCCTTCATA 2721 Query 47567 TGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCACTATAATA 47626 ||||| ||| || || | || ||| ||||||||||| ||||| | || | ||| || Sbjct 2720 TGTTTCATATGGTCCATCCTTTTCAGCCAGTTCACAACTAGCTTCAAGAGCTCCATAGTA 2661 Query 47627 TATTGTTTCAAATATTTTTATGTTTA--GATTCCTTGCTTCTGATGATTCAAAAGGATAN 47684 ||||||||||| |||| | ||| | ||| |||||| |||| ||||| | Sbjct 2660 AATTGTTTCAAAAATTTGTTGGTTCAACAATT--GAGCTTCTTTGCTTTCATAAGGAAAA 2603 Query 47685 NNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTCTATGAGTT 47744 || | ||| | |||||||||||||||||||| || |||||||| Sbjct 2602 CGCATAATAATCAAAGCATCAGAAAATCCTTGAACACCAATACCTATAGGTCTATGTCGC 2543 Query 47745 TTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTTTATT 47800 ||| || || ||||||||| |||||||| | |||| ||| || ||||| || Sbjct 2542 AAATTCGATTTCTTAGCTTCTGGCAATGGATAATAATTTACATCAATGATTTTGTT 2487 >seq116385 Length=1425 Score = 167 bits (184), Expect = 3e-36 Identities = 355/530 (67%), Gaps = 0/530 (0%) Strand=Plus/Minus Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023 ||||| ||||| || ||||| ||||| ||| || | |||||| || || || |||||| Sbjct 583 GCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAACCA 524 Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATA 19083 ||||||| || || || || |||||||| || | || || ||| ||||| || Sbjct 523 GGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACTTCCGCTGAAGAAAATG 464 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC 19143 ||||| || || |||||||||| | ||| || || | | || ||| | |||| Sbjct 463 CCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCAAAGGTGGCGGATTTACTGCCAATC 404 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203 || || |||||| ||||||||||| || ||||| || | |||| | || || || Sbjct 403 CAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAAGGTAGATTCTCGACAGCGTTGAAG 344 Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 || | | || | || ||| | || | || || || | |||||||||||| Sbjct 343 AGGAAGTCTCTTTCCTGTGGATCGCGGATGTAAGAGTCGATTAAAATACTGTACATTTCC 284 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || || | || || ||||| ||||| || || || ||||| | ||||| || ||||| Sbjct 283 GAGTGGACGTTCTCCATAGCAATCTGGAACCCATAGAAACAGCGAGCTTCAGTAATCTGG 224 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||||| || | ||| ||||| |||||||| || || ||||| ||| || || Sbjct 223 ACTTCCTGGGTGAAACGTTCCACCAAGTTTTCATTGACAATGCCATCGGAAGCGGCGAAG 164 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTA 19443 || || || || || ||| || || || || | || | || | | ||| || Sbjct 163 AAAGCCAAAACGTGGGAAATGAAGTGCTTCTCTCCGGAATTCAACTTCTCCCAGTCGGCT 104 Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 || || |||| ||| || || || || ||||| || |||||||| || Sbjct 103 TGGTCCTTGGATAGATCGACCTCCTCCACAGTCCAGAACGAAGCCTCCGC 54 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 18964 GCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCA 19023 ||||| ||||| || ||||| ||||| ||| || | |||||| || || || |||||| Sbjct 750 GCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAACCA 691 Query 19024 GGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATA 19083 ||||||| || || || || |||||||| || | || || ||| ||||| || Sbjct 690 GGCATCAAACCCCTCTTCTTCAACCAGAAGATCGCGGCGAAACTTCCGCTGAAGAAAATG 631 Query 19084 CCTTCTACTGCTGCAAAAGC 19103 ||||| || || |||||||| Sbjct 630 CCTTCAACAGCGGCAAAAGC 611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561255947449560