Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq26001 138 9e-28 seq30215 122 7e-23 seq63354 111 1e-19 seq38947 84.2 2e-11 >seq26001 Length=10617 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 ||||||||||| ||||| |||||||| ||||||||||||| | ||| | | | || || Sbjct 8770 ACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTACGGCCGTCTTCA 8711 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || || || ||||| | || ||||| || ||||| || ||||| |||||| Sbjct 8710 AGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGA 8651 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| | || | ||| || || | ||| ||||| || || | ||||| Sbjct 8650 ATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTACTTCTAGGGTAATGGTTTTA 8591 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | |||||||| || || ||||| Sbjct 8590 CCCGTGAGGGTTTTTACGAAAATTTGCAT 8562 >seq30215 Length=1837 Score = 122 bits (134), Expect = 7e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||| || || || ||||| ||||||||||| | | || | | || ||| Sbjct 1729 ACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATGTACGACCGTCTTCC 1670 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 |||||||| || || || |||||||||||||| || || ||||| |||||||| |||||| Sbjct 1669 AATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGA 1610 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| || ||| | || | || || || | || || || | || | || || Sbjct 1609 ATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCTTA 1550 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || ||||| || || || ||||||||| Sbjct 1549 CCAGTCAAAGTCTTGACGAAAATCTGCATG 1520 Score = 82.4 bits (90), Expect = 6e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||||||||| || || || |||||||||||||| || || ||||| |||||||| ||| Sbjct 1835 TCCAATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCT 1776 Query 101378 TGAATTTT 101385 |||||||| Sbjct 1775 TGAATTTT 1768 >seq63354 Length=4016 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| || || || |||||||| || || ||||| || ||||| |||| | || | | Sbjct 1989 ACGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCC 1930 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 || ||||||||||| || || || |||||||| |||||||| || || || || ||||| Sbjct 1929 GTCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCTTT 1870 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| || || || ||| |||| | ||||| || | ||| ||||| | || | Sbjct 1869 GTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGACTTCCAAGGTAAT 1810 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || | || || || || |||||||| Sbjct 1809 GGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCAT 1774 >seq38947 Length=4217 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/189 (71%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 13761 CATAACCGTTGGGATCGCGTCCATCCAAACTGTATTTGTCGTTGAAATATATGGC-GTTG 13819 |||| || || ||||| |||||||| | ||||| || || || || | || || ||| Sbjct 1274 CATAGCCATTTGGATCCCGTCCATCAAGGCTGTACTTATCATTCAAGAAAATCGCAGTT- 1332 Query 13820 ATTAA-AGCCACTGTAGGCGAAATAGACCATTCTAATAtttttttAGCCCAATATATTCT 13878 | || |||| || || || ||| ||| || | || ||||| |||||||| |||| Sbjct 1333 -TCAAGAGCCTCTTCCGGGGACTTAGTCCACTCAAGAATCTTTTTTGCCCAATACATTCG 1391 Query 13879 CATATATCCGTGCATTTTGCCTTGCGTTTTAAGCTGTGTCTGAGCAGCGTTCCACAATAT 13938 || ||||||||||||| || | ||| ||| || | || |||| ||||||||| Sbjct 1392 CAAGAATCCGTGCATTTTACCATCAGTTAGAAGTTGAATTTGTGCAGAGTTCCACAAATC 1451 Query 13939 GTCATGAGT 13947 |||||||| Sbjct 1452 ATCATGAGT 1460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395692182762303