Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq17584 145 6e-30 seq30215 111 1e-19 seq26001 104 2e-17 >seq17584 Length=4186 Score = 145 bits (160), Expect = 6e-30 Identities = 267/390 (68%), Gaps = 5/390 (1%) Strand=Plus/Plus Query 8961 AATAAAATGTTACAATAAACTGATATATAATTAATTAGTACCGGTTGACCCAAACCCTCC 9020 ||||||||||| | ||| ||| ||||| || | |||| ||||| ||||| ||| | Sbjct 1996 AATAAAATGTTCATAGAAA---ATAAATAATAAAAT--TACCTGTTGATCCAAAACCTGC 2050 Query 9021 CTCTCCGCGATTGGTGTCAGTCGTGGAAGTAACCTCTACCAGTGTGGGATAAAAGATTTG 9080 | ||||| | |||||| | | | | ||| || | | || || || ||||| Sbjct 2051 GGCGCCGCGTTCTGTGTCATCCAAAGTCTTCATCTCGACGATTTCTGGGTAGAATATTTG 2110 Query 9081 TTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTCGGAATG 9140 |||||| |||| |||||| || ||||| ||||| || || | ||||| |||||||| Sbjct 2111 TTCACAGATTAGTTGAGCGATTCTGTCTCCCTTCTTGACATCGAAGTCCTGATCGGAATG 2170 Query 9141 ATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGCACCCAC 9200 ||||||| || || || | || |||| |||||| || ||||| || ||||| || || Sbjct 2171 GTTGAACAAAACGACGCCGAGATTTCCCCGGTAATCTTCGTCGATGACTCCAGCGCCAAC 2230 Query 9201 GTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCATCCCAC 9260 |||||||||| ||| || || || ||||| | || || | || ||| ||| |||| | Sbjct 2231 ATCGATGAAGTTCTTTACAGCCAGGCCAGATCTTGGAGCCACTCTACCATAGGATCCTTC 2290 Query 9261 CGGTAATTGCACCCGCAAGTCGGTCATGACCAGCCCCTTGCCGTGTTTTGGAATCACGGT 9320 || | ||| | | | ||| || |||||| | || || |||| || | Sbjct 2291 GGGAACTTGGATTTGAATGTCAGTTTTGACCACGGCTTTTCCTCTGGCCGGAACTACTAT 2350 Query 9321 GTCGTAGCCGCTCTTGAGATCAAACCCAGC 9350 || ||| |||| |||||||| | ||||| Sbjct 2351 ATCATAGGCGCTTCTGAGATCATATCCAGC 2380 >seq30215 Length=1837 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || ||| ||| ||||||||||||||||| || | | ||| |||| ||| Sbjct 1729 ACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATGTACGACCGTCTTCC 1670 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| || || || |||| |||||||| || | |||| || || ||||| | Sbjct 1669 AATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGA 1610 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || || ||| | | | || || | ||| ||||||| ||||| || || Sbjct 1609 ATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCTTA 1550 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || ||||||||||| Sbjct 1549 CCAGTCAAAGTCTTGACGAAAATCTGCAT 1521 >seq26001 Length=10617 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| ||||| || || ||||||||| ||||||||||| || ||| | || Sbjct 8779 AGACGAAGCACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTACGG 8720 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | ||||| || || || |||| || || ||||| | |||| ||||| Sbjct 8719 CCGTCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCCTCT 8660 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| ||| ||| | | || || || | || || || | ||| Sbjct 8659 TTGTCTTGAATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTACTTCTAGGGTA 8600 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGTGTAC 48775 || ||||| ||||| | |||||||| ||||| ||||| |||| || Sbjct 8599 ATGGTTTTACCCGTGAGGGTTTTTACGAAAATTTGCATTCTGTGAAC 8553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380374076508417