Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq114749 93.3 5e-14 >seq114749 Length=5030 Score = 93.3 bits (102), Expect = 5e-14 Identities = 131/181 (72%), Gaps = 5/181 (3%) Strand=Plus/Minus Query 139854 AACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGT 139913 |||| ||||||||||||||| ||||| ||||||| || | ||| |||||||||| | Sbjct 1363 AACA-CATTGCCTCTGCTGCGGCAGTACCTTCATCCAACAAAGAAGCGTTTGCTACTTCC 1305 Query 139914 AATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGA 139973 || || || | || | | || || || || |||| | | ||||| | ||||||| Sbjct 1304 AAGCCAGTCAAGTCGGAAACTAGAGTCTGATAGTTGAGAAGGGACTCCAAACGTCCCTGA 1245 Query 139974 GATATCTCAGCTTGATAGGGAGTGTAAGATGTGTA--CCAACTAGGATTCTCAAGAACGT 140031 | || |||| |||||| || || || || ||| ||||| ||||||||||| || || Sbjct 1244 GCGATTTCAGGTTGATATGGGGTATAC--TGAGTAGTCCAACCAGGATTCTCAAAAATGT 1187 Query 140032 T 140032 | Sbjct 1186 T 1186 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 139296 GACATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTA 139355 ||||| || || | | || || ||||||||||| ||||| || |||||||| | | | Sbjct 1913 GACATGTTGGCTAATAAAGCCTGAGCTGTGCAGATATTACTAGTGGCTTTGTCGCGACGA 1854 Query 139356 ATATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTC 139405 ||||| |||||||||||||| || ||||||||||| ||| ||||| || Sbjct 1853 ATATGTTGCTCTCTAGTTTGAAGAGCTAATCTGTAAGCATCGTTGCCGTC 1804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578119921915080