Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq26001 149 1e-30 >seq26001 Length=10617 Score = 149 bits (164), Expect = 1e-30 Identities = 182/247 (74%), Gaps = 1/247 (0%) Strand=Plus/Minus Query 171825 CTTTTTA-GTTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTT 171883 ||| ||| ||||| | |||||| | ||| || | |||||||| | ||||| |||||| Sbjct 8807 CTTCTTACGTTTCTTGGCACCACCACGAAGACGAAGCACTAAATGAAGAGTAGACTCTTT 8748 Query 171884 AGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAA 171943 ||||| ||||| || | || || |||| || | ||| || ||||| || || || Sbjct 8747 TTGGATATTGTAATCGGAAAGAGTACGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAA 8688 Query 171944 TCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT 172003 ||| || || || || || ||||| ||||| ||||| || || ||| ||||| || Sbjct 8687 TCTTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTGGCTTTAACATTCTCGAT 8628 Query 172004 AGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATAT 172063 |||||| || | |||||||||||| |||||||||||||| || | ||||| | ||| || Sbjct 8627 AGTATCCGAAGGTTCTACTTCTAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGAAAAT 8568 Query 172064 CTGCATT 172070 |||||| Sbjct 8567 TTGCATT 8561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903762693718200