Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq12612 140 1e-27 seq93051 138 3e-27 seq43850 98.7 3e-15 seq56451 84.2 6e-11 >seq12612 Length=11867 Score = 140 bits (154), Expect = 1e-27 Identities = 196/272 (72%), Gaps = 6/272 (2%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| |||||||||||| || || |||||||| ||| Sbjct 5070 TCCATAGCCTTTATGAGACGACGCTGGATATAACCAGTTTCAGCAGTCTTTACAGCAGTA 5129 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| ||||| |||||||||||||||| |||||| | | |||| ||| | || Sbjct 5130 TCAATCAGACCTTCACGACCACCCATAGCGTGGAAGTAGAACTCTGAAGGTGTCAAACCG 5189 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGTA 302751 ||| | || | || ||||| ||||| | || || || ||||||| ||| | Sbjct 5190 GCAAGGTATGAATTTTCTACGAAGCCACGAGATTCAGGACCGTAATCGTC---TTTGATG 5246 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || ||||||| ||| || ||| ||||| | || ||||| || || ||||||||||| Sbjct 5247 AAATGTGGCAAGGTTCTCTTCCTGAAGCCGAACGGAATACGTTTACCTTCAACGTTCTGT 5306 Query 302812 TGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 || |||| || | ||| | ||| || || || Sbjct 5307 TGACCCACACAAGCAATAACCTGGGAGATGTT 5338 >seq93051 Length=3786 Score = 138 bits (152), Expect = 3e-27 Identities = 466/718 (65%), Gaps = 7/718 (1%) Strand=Plus/Minus Query 155631 TATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTA 155690 |||||||| || || ||| || || | || ||||| |||| || | || ||| Sbjct 2192 TATTCTACTATTTCTGTGCAAAGATTGCTGCATTTTATGGTACCTACGTTTTGTTGATTA 2133 Query 155691 GATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCG 155750 ||| || ||||||||||| || |||| ||||||||||| || || || | |||| Sbjct 2132 CTTTTCCTATTACAAGCATCTTTATATAACATGTATGGGGTACCAGTTTCAACTTGTGAC 2073 Query 155751 TCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGAC 155810 || | || | ||| | | | || ||||||| ||| | | || ||| | Sbjct 2072 TCGATTATGGCAAACCACAATTGTTGAGCTTTAATTTTACGGTTAGCTTTTCCCTCCTTC 2013 Query 155811 TCATATTTCATATACAGCGTTCGGTAA-TCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 || ||||| | || || ||| || ||||| || || |||| || || || || Sbjct 2012 TCGTATTTTACGTAGAGA-TTCTCAAACTCCTCTCCCCAAACATCATGTAGCCCTGGACA 1954 Query 155870 CTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATC 155929 |||| ||| || | || |||||| | || | | ||| || | ||| |||| ||| Sbjct 1953 TTTATGGGGACACATCAATGACCAATCCTCATCAGCTTCTACGCGTTTCATGAATAAATC 1894 Query 155930 ACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGA-CTCCTCATCGCCGTGATTCT 155988 ||| | |||||| || || || ||||| | || ||| || | || ||| | Sbjct 1893 GGGAATCCATAAAGCATAAAATAGATCTCTTGC-TCGGAGCTCATCTTTACCTGTATTTT 1835 Query 155989 TCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA- 156047 || | ||||| ||||| |||||||| ||| |||||| | ||| ||||||||| Sbjct 1834 TCTTCAAGTCTAAAAATTCAAAAATATCAGAATGCCATGGCTCTAAATAAATAGCAAAAG 1775 Query 156048 CTACCATTCCTCT--TGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 || | || | | | ||||||||||| ||||| ||| |||||||| || | | Sbjct 1774 CTCCGGGTCTTTTATTTCCACCCTGATCCACATATTTTGCAACGTTATTGAACACTCTAA 1715 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||||||| | | ||| || ||||||||||| ||||| ||| | || | | Sbjct 1714 GCATAGGTACTAAACCGTTAGAAGTGCCATTAGTTCCTGCTATAGTAGTGCCTTTAGCAC 1655 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| ||| | || || ||||| || || | | |||||||| ||||||| | Sbjct 1654 GAATGCAATGCACATTTATACCAATTCCGCCAGCGGACTTAGAAATCATTGCGCATTGTT 1595 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAAC 156285 || | || || || |||||||| || ||| ||||| || ||| | || || Sbjct 1594 CGACTGATTTAAAGATTCCTTCAATTGAGTCAGAGCACATTGTTAAGAGAAAACAGGATG 1535 Query 156286 TTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA 156343 || |||||| || ||||| | || ||| || ||||||| ||||| |||||||| Sbjct 1534 ATAGTTGAGGGCGAGGTGTAGCTGCCGCGAACAGGGTAGGTGAAGCATGGATAAAATA 1477 >seq43850 Length=9081 Score = 98.7 bits (108), Expect = 3e-15 Identities = 149/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||| | || ||||||||| |||||||| || || || |||||||| || || | | Sbjct 8211 TGGCCAATTGTCATACGAGAAGGAATAGCGTGCGGGTTAATGATGATATCTGGAGTTAAG 8152 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAATGTTTCCAATA-GTTCCCTTT 251955 || |||| ||||| ||||| || ||||| | || || | | | | ||||||||| Sbjct 8151 CCTTCAGATGTGAAAGGCATGTC---TTCCTGCCTGTATTGAATACCACATGTTCCCTTT 8095 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGA 252015 ||||| || |||||| ||||| || ||||| ||| ||| ||| |||| ||| Sbjct 8094 TGTCCATGCCGAGAAGCAAACTTGTCTCCAATTTGTGGAATGCGCACAGACCGAACACGA 8035 Query 252016 ACCTTACAGAAGTTGTAACCATCACCGTT 252044 | |||||| || |||||||| |||| ||| Sbjct 8034 ATCTTACAAAACTTGTAACCCTCACTGTT 8006 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 ||||| | ||| || | |||||| ||||| | | |||| ||| ||| | ||| | || Sbjct 8702 GCGATCAAACCGCAATAATTACAAACATGAATTCGATAAGGATCCGATACTTCAAACAGT 8643 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | | | ||| | | ||| ||||| | ||| |||||| || |||||||| ||| Sbjct 8642 CTTTCTCTAAGGAACTGGGCTGCTCCGTGAGCAATTTGACAATCTCGTTCCATTTCTCCG 8583 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACG 251567 ||||| |||||||| || | |||||||||||| ||| ||||| Sbjct 8582 AAACGCAGACCACCGTCCCTAGCCCTACCCTCCATAGGTTGACG 8539 >seq56451 Length=2666 Score = 84.2 bits (92), Expect = 6e-11 Identities = 88/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 219866 AAGTGTAAAGAAAATAAATGTACTTATTATCAATTACAAACACGTAGTGCTGATGAGTCT 219925 |||||||| || ||| || ||||| |||||||||||||| | ||||||||||| || Sbjct 1593 AAGTGTAAGAAACGTAATTGCACTTACAATCAATTACAAACAAGAAGTGCTGATGAACCT 1652 Query 219926 ATGACTACGTTTGTAACTTGTATTCCTTGTGGTAATAGATGGAAG---TGTTAAA 219977 |||||||| || |||| |||| |||||| || | |||||| ||||||| Sbjct 1653 ATGACTACTTTCGTAATGTGTAACGAATGTGGTCATCGCTGGAAGTTCTGTTAAA 1707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1469528675722723