Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq16874 125 6e-24 seq26001 82.4 6e-11 >seq16874 Length=9872 Score = 125 bits (138), Expect = 6e-24 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 || ||||||| || ||||| || |||| ||||| || || || || || | || | Sbjct 4049 TTATAATCGAATTGAGTTTGAGCTCCCAATTCGCATCCAAAATATTTGGTTGTATATGTA 4108 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || ||||| | || ||||| | ||||| ||||||||| || ||||| ||||| || Sbjct 4109 GCTGGGCGTCCTATGGCTTTGGCTACTTCGGCCATGTTGACAATAACAGTTTTGATTCCA 4168 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 |||||||| ||||| || ||||| ||| | |||||||| ||||| || || || Sbjct 4169 TTGCCCTTGCCTTCTACTTTGGCTGTGATTCTGGGCATTTTATAGCGATAAAAAATATCA 4228 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCAT 34643 | |||||||||||||| || || | ||||| Sbjct 4229 GTAACATTGCGGTTAACATTGACGGAACCCAT 4260 >seq26001 Length=10617 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 ||||||||| || || ||||| | || || |||||||||||| | ||| || ||| Sbjct 8561 AATGCAAATTTTCGTAAAAACCCTCACGGGTAAAACCATTACCCTAGAAGTAGAACCTTC 8620 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| ||| | || ||| |||||| |||||||| || | || ||||| Sbjct 8621 GGATACTATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCA 8680 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| | || | || || || || || || || | | | || | | |||||||| Sbjct 8681 GCAAAGATTGATCTTCGCTGGCAAGCAACTTGAAGACGGCCGTACTCTTTCCGATTACAA 8740 Query 110452 CATTCAAAAAGAATCTAC 110469 || |||||||| ||||| Sbjct 8741 TATCCAAAAAGAGTCTAC 8758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412230880711847