Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq37719 118 2e-20 seq44553 102 1e-15 seq5678 95.1 2e-13 seq26849 89.7 8e-12 >seq37719 Length=1277 Score = 118 bits (130), Expect = 2e-20 Identities = 172/243 (71%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||| || ||||||||||| ||||| ||||||||| | |||| ||| ||| ||| Sbjct 529 TGTATTTGGTAACAGCCTTGGTACCTTCTGATACGGCGTGCTTAGCCAATTCACCGGGCA 470 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || || || ||||| || || || ||| || || ||||| | Sbjct 469 ACAAGAGACGAACAGCAGTTTGGATTTCCCGACTGGTGATGGTCGAACGTTTGTTGTAGT 410 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | |||| | | | || | | |||| || |||| ||||||||||| || ||||| Sbjct 409 GAGCCAATCTGGATGATTCAGAGGCGATACGTTCGAAGATGTCGTTGACGAAACTGTTCA 350 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||||||||| | |||| ||||| || ||| || || || ||||| | ||| |||| Sbjct 349 TGATCGACATAGCTTTGGATGAGATTCCAGTGTCTGGATGGACTTGCTTCAACACTTTGT 290 Query 1485710 AAA 1485712 ||| Sbjct 289 AAA 287 >seq44553 Length=6885 Score = 102 bits (112), Expect = 1e-15 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 ||| | |||||||||||||| || ||||| ||| | ||||| ||| | | ||| | Sbjct 3821 ACCTTGTTTGAGTTGATCCTTGCGGCCAATTACTTGGACATTAAGGGTTTGTTGGATGTC 3880 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 ||||| |||||||||||| | |||||||| ||| | || ||||| |||||||| || Sbjct 3881 ACCTGCAAAACCGTGGCCAACATGATCAAGGGTAAGACTCCTGAGGAGATCCGCAAAACG 3940 Query 2035746 TTTAACATCAAGTACG 2035761 || ||||||||| ||| Sbjct 3941 TTCAACATCAAGAACG 3956 >seq5678 Length=25936 Score = 95.1 bits (104), Expect = 2e-13 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 1485487 TTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCG 1485546 |||||||| ||||| || |||||| | |||| ||| ||| ||| | || || || || Sbjct 21380 TTGGTACCTTCTGATACAGCGTGCTTAGCCAATTCACCGGGCAACAAGAGACGAACAGCA 21439 Query 1485547 GTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGT--TAGTGCGCGCCAGGCGGCCGG 1485604 || ||||| || || || ||| ||| ||| |||| || || || || | | Sbjct 21440 GTTTGGATTTCCCGACTGGTGATGGTGGAGCGTTTGTGGTATTGAGC--CAATCTTGATG 21497 Query 1485605 CCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATCGACATCGATT 1485664 || | | | || || |||| |||||||||||||| ||||||||| ||||| | || Sbjct 21498 ATTCAGAGGCAATACGTTCGAAGATGTCGTTGACAAAACTGTTCATGATTGACATAGCTT 21557 Query 1485665 TGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 || ||||| || |||||| || || ||||| | ||| ||||||| Sbjct 21558 TGGATGAGATTCCAGTGTCGGGATGGACTTGCTTTAACACTTTGTAAA 21605 >seq26849 Length=3944 Score = 89.7 bits (98), Expect = 8e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 1812784 GCCTCGGTGGCGCAGTTGGCGGCGCGCCAATCCCATAAATTGGAGGTCGTGAGTTCGATC 1812843 |||||||||||||||||||| ||||| || || ||||| || ||||||||||||||| | Sbjct 3191 GCCTCGGTGGCGCAGTTGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGC 3250 Query 1812844 CTCACCCGAGGTAT 1812857 |||||||| || || Sbjct 3251 CTCACCCGGGGCAT 3264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7903334762160381