Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq26001 161 8e-35 seq63354 131 1e-25 seq30215 114 1e-20 >seq26001 Length=10617 Score = 161 bits (178), Expect = 8e-35 Identities = 168/218 (77%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| ||||| |||||||| || || |||||||| || || ||||| | || || || Sbjct 8777 ACGAAGCACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTACGGCC 8718 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || ||||| |||||||| | ||||||||||||||||| || ||||| |||||||| Sbjct 8717 GTCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCCTCTTT 8658 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 |||||| ||| || | ||| ||| | || | ||| || ||| |||||||||| || || | Sbjct 8657 GTCTTG-AATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTACTTCTAGGGTAA 8599 Query 29750 TAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | ||||| || || | |||||| || || || |||||| Sbjct 8598 TGGTTTTACCCGTGAGGGTTTTTACGAAAATTTGCATT 8561 >seq63354 Length=4016 Score = 131 bits (144), Expect = 1e-25 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||||| |||||| ||||| ||||| || ||||| ||||| || || | | |||||| Sbjct 1989 ACGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTGCGTCC 1930 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || || | ||| || ||||| | ||||| | ||| ||||| || || || |||||||| Sbjct 1929 GTCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGGATTCCCTCTTT 1870 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || |||||| |||| | ||||| ||| |||| ||||| | || || Sbjct 1869 GTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGACTTCCAAGGTAAT 1810 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| | ||| || || || ||||||||| Sbjct 1809 GGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCATT 1773 >seq30215 Length=1837 Score = 114 bits (126), Expect = 1e-20 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATC 29633 || ||||||||||| ||||| || |||||||| || ||||| | ||||| | ||| || Sbjct 1732 AGGACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATG-TACGACCGTC 1674 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | ||| || ||||| | ||||| | || || || || |||||||| |||||||| Sbjct 1673 TTCCAATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTC 1614 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 ||| |||||| | |||||| | || | || || ||| | || || || | || || | Sbjct 1613 TTG-AATTTTAGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTG 1555 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || || || || || |||||||| Sbjct 1554 TCTTACCAGTCAAAGTCTTGACGAAAATCTGCAT 1521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384649342709439