Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq26001 176 9e-39 seq63354 145 1e-29 seq56330 84.2 4e-11 >seq26001 Length=10617 Score = 176 bits (194), Expect = 9e-39 Identities = 169/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 ||| || ||||| || |||||||| ||||| || ||||| ||||| || ||| | | || Sbjct 8777 ACGAAGCACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTACGGCC 8718 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 |||||| ||||| || ||||| ||||| | |||||| ||||||||||| ||||| || || Sbjct 8717 GTCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCCTCTTT 8658 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 ||||||||||| ||||| ||||| || || ||||| |||||||||||| | || || Sbjct 8657 GTCTTGAATCTTGGCTTTAACATTCTCGATAGTATCCGAAGGTTCTACTTCTAGGGTAAT 8598 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || || | || ||||| || || |||||| Sbjct 8597 GGTTTTACCCGTGAGGGTTTTTACGAAAATTTGCATT 8561 >seq63354 Length=4016 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||||| || ||||| || || || || || || || || || || | Sbjct 2002 TACCACCACGGAGACGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGG 1943 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | |||||||| | ||| |||||||| ||||| | | |||||||||||| | Sbjct 1942 ACAAGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTG 1883 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| || || ||||| ||||| || || ||||||||||| || || |||||| | Sbjct 1882 GGATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGA 1823 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||||| || || ||||| || || | ||||| || || ||||||||| Sbjct 1822 CTTCCAAGGTAATGGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCATT 1773 >seq56330 Length=10122 Score = 84.2 bits (92), Expect = 4e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 198315 GAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAA 198374 ||| |||| ||||| |||| | |||||| || | ||||| ||| | | | ||| Sbjct 2673 GAAGAGGCTAAAACATATGATGACTTGTGGAATTCAGCCCAAATTCAGTTAGTGAATGAA 2614 Query 198375 GGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGA 198434 || ||||||||| | |||||||| ||||| |||||||||||||| | || ||| || | Sbjct 2613 GGGAAAATGCATGGATTTTTAAGGATGTATTGGGCTAAAAAGATTTTGGAGTGGGCAGAA 2554 Query 198435 ACACCGGAAGACGC 198448 |||| ||||| || Sbjct 2553 TCACCTGAAGAAGC 2540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980300293327481