Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq93051 260 3e-64 seq119999 84.2 5e-11 >seq93051 Length=3786 Score = 260 bits (288), Expect = 3e-64 Identities = 582/866 (67%), Gaps = 21/866 (2%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||| ||||| || || || | ||||| |||||||| | | |||||| | ||| Sbjct 1319 ACTACTTTGGATTTAAGACCTTGGAACGCTCTTATTTATTGAAAATAAATGGCAAAATCG 1378 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||| | || ||||||||| || | | || | | || ||||||||| |||||||| Sbjct 1379 CCGAAAGACCACAACACATGCTTATGAGAGTGTCCGTAGGAATTCATGGAAATGATATTG 1438 Query 110422 AAGCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTACTCCT 110480 | | | ||| || ||| | | ||| | ||||| | | || |||||| | ||| Sbjct 1439 ATTCAGCTATAGAGACATATAACCTTTTATC-AGAAAGATATTTTATCCATGCTTCACCT 1497 Query 110481 ACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATT 110540 ||||| || |||| || | | ||| | | || || ||||| || ||| Sbjct 1498 ACCCTGTTCGCGGCAGCTACACCTCGCCCTCAACTATCATCCTGTTTTCTCTTAACAATG 1557 Query 110541 AACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAA 110600 | ||| || |||||||| || | | | | | || || || | |||||||| Sbjct 1558 TGCTCTGACTCAATTGAAGGAATCTTTAAATCAGTCGAACAATGCGCAATGATTTCTAAG 1617 Query 110601 AACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCA 110660 | |||| ||||||||||| | || ||| ||||| | ||||| | | ||| ||| Sbjct 1618 TCCGCTGGCGGAATTGGTATAAATGTGCATTGCATTCGTGCTAAAGGCACTACTATAGCA 1677 Query 110661 ACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCA 110720 | | || || |||| | || | || || ||| | ||||| ||||| || |||| Sbjct 1678 GGAACTAATGGCACTTCTAACGGTTTAGTACCTATGCTTAGAGTGTTCAATAACGTTGCA 1737 Query 110721 AAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCT 110777 ||||||||| |||| ||||| ||| ||| || | |||||||| ||| | || || Sbjct 1738 AAATATGTGGATCAGGGTGGAAATAAAAGACCCGGAGCTTTTGCTATTTATTTAGAGCCA 1797 Query 110778 TGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAA 110837 |||||||| ||||| |||||||| ||||| | |||||| ||| || || | Sbjct 1798 TGGCATTCTGATATTTTTGAATTTTTAGACTTGAAGAAAAATACAGGTAAAGATGAGCTC 1857 Query 110838 AGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAA 110897 ||||| | ||| |||||||||| | |||||| | ||||||||||||||||| || || Sbjct 1858 CGAGCAAGAGATCTATTTTATGCTTTATGGATTCCCGATTTATTCATGAAACGCGTAGAA 1917 Query 110898 GAAAATG-GCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATA 110956 | ||| | || ||||| | |||||||| ||| | ||| || ||| |||||| | Sbjct 1918 GCTGATGAGGAT-TGGTCATTGATGTGTCCCCATAAATGTCCAGGGCTACATGATGTTTG 1976 Query 110957 TGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAAC- 111015 ||| | |||||||| | || |||| |||||| || || || || || || ||| Sbjct 1977 GGGAGAGGAGTTTGAGAATCTCTACGTAAAATACGAGAAGGAGGGAAA----AGCTAACC 2032 Query 111016 ---AAATTCCAGCTCAAGAACTTTGGTT---CAAAATCCTTGAATCACAAGTTGAAACTG 111069 ||||| ||||||| || | ||||| || |||| || |||||||||||||||| Sbjct 2033 GTAAAATTAAAGCTCAACAATTGTGGTTTGCCATAATC---GAGTCACAAGTTGAAACTG 2089 Query 111070 GAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAG 111129 | || || || || || ||||||||| | |||| | ||| ||||||| || ||| Sbjct 2090 GTACCCCATACATGTTATATAAAGATGCTTGTAATAGGAAAAGTAATCAACAAAACGTAG 2149 Query 111130 GAACAATTAAGTCTAGTAATTTGTGC 111155 | || || || | || ||| | ||| Sbjct 2150 GTACCATAAAATGCAGCAATCTTTGC 2175 >seq119999 Length=1257 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 |||||||||| || ||||||||||| |||||||| |||||||| ||||| ||||| || Sbjct 191 TTAAAGGTAAGGAAGGTCGTATTCGTGGTAATCTGATGGGAAAGCGTGTGGATTTCTCTG 250 Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCA 305101 | | | ||| || || |||||| || | || || || || || | || || ||| Sbjct 251 CTCGTACTGTCATTACTCCTGATCCTAACCTTCGTATTGATCAAGTCGGTGTACCA 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1184967106192219