Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq63354 118 7e-22 seq30215 114 8e-21 seq26001 102 5e-17 seq36022 91.5 1e-13 >seq63354 Length=4016 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||||||| || || ||| ||| ||||| |||||||| ||||| Sbjct 2001 ACCACCACGGAGACGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGA 1942 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| |||| |||||||| ||||| || || |||||||| || |||||| | || Sbjct 1941 CAAGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGG 1882 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || |||||||| || || || | ||| ||| ||||||| | ||| | Sbjct 1881 GATTCCCTCTTTGTCTTGGATCTTGGCCTTGA-CATTTTCAATGGTGTCGGAAGGTTCGA 1823 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || ||||| || | || || || ||||||||||| Sbjct 1822 CTTCCAAGGTAATGGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCAT 1774 >seq30215 Length=1837 Score = 114 bits (126), Expect = 8e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| |||||| ||| ||||| || |||||||| || | ||| || |||| ||| Sbjct 1729 ACCAAATGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATGTACGACCGTCTTCC 1670 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 ||||| ||||| || || ||||||||||| || ||| | || | |||||||||||| | Sbjct 1669 AATTGCTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGA 1610 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 ||||| | | |||| || | ||| ||| | || || || | || || || || Sbjct 1609 ATTTT-AGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCTT 1551 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || || || || || |||||||| Sbjct 1550 ACCAGTCAAAGTCTTGACGAAAATCTGCAT 1521 >seq26001 Length=10617 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | ||| ||||| ||||| ||||||||| || |||||||||| Sbjct 8790 CACCACCACGAAGACGAAGCACTAAATGAAGAGTAGACTCTTTTTGGATATTGTAATCGG 8731 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || || |||| || | ||| || || || || ||||| | ||||||||| | | Sbjct 8730 AAAGAGTACGGCCGTCTTCAAGTTGCTTGCCAGCGAAGATCAATCTTTGCTGATCTGGAG 8671 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || |||||||| ||| || | || ||||| || | || || | ||| Sbjct 8670 GAATTCCCTCTTTGTCTTGAATCTT-GGCTTTAACATTCTCGATAGTATCCGAAGGTTCT 8612 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || |||||||| || | |||||||| || || ||||| Sbjct 8611 ACTTCTAGGGTAATGGTTTTACCCGTGAGGGTTTTTACGAAAATTTGCAT 8562 >seq36022 Length=1786 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| |||| ||| || || ||| ||| ||||| |||||||| ||||| Sbjct 1314 ACCACCACGGAGACGCAACAGCAAGTGAAGGGTGGGCTCCTTTTGGATGTTGTAGTCGGA 1255 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACG 33626 | ||||||||||| |||||||| ||||| || || |||||||| Sbjct 1254 CAAGGTGCGTTCGTCTTCCAATTGCTTTCCAGCGAAGATCAAACG 1210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328217746015680