Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq93051 154 1e-32 seq26001 118 9e-22 seq116385 84.2 2e-11 >seq93051 Length=3786 Score = 154 bits (170), Expect = 1e-32 Identities = 341/507 (67%), Gaps = 7/507 (1%) Strand=Plus/Minus Query 136975 TGCTGATTTACTACTTGATATTCGCCCGATAGCACTCTGCGTACGTACAGATTACTAGTG 137034 || ||||| || || || | || || |||| |||||||| || | |||| ||| Sbjct 2974 TGATGATTAACCACCTGGAACTCTCCAGATAAGACTCTGCGGTTATAAATATTAGATGTG 2915 Query 137035 AACGGCTCGAACGATTCGTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAA 137094 | |||||||| ||||| || ||||||||||| || || || | |||||| ||||| | Sbjct 2914 TATGGCTCGAAGGATTCATTATTACCCAAAATTTGAGCTGTGGACGCTGTAGGCATTGGA 2855 Query 137095 GCGATCAACAATGAATTCCGTAAACCGTGTACGGCCAATTGTTGCTTGAGCTCTTTCCAG 137154 || | || | || || | || || || | | | || || | ||| |||| Sbjct 2854 GCAAGTAATAGGGAGTTTCTTACGCCATGCAATTTTATCTTTTCTTTCAATGCTTGCCAG 2795 Query 137155 TTCCACAGATTGTTCGATTGG-GTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACT 137213 | ||| | | || |||| ||| ||| ||||| |||| |||| | || ||| || Sbjct 2794 TCCCATAAGT----CGGTTGGAGTTTTATCCCACATATCATACTGGAGAATTCCTTTGCT 2739 Query 137214 TGCAGGACTTTCTGCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTG 137273 | | |||||| || |||| | ||||||| ||| | | || ||||||||| ||| Sbjct 2738 TACTGGACTTCCTTCATATGTTTCATATGGTCCATCCTTTTCAGCCAGTTCACAACTAGC 2679 Query 137274 GACTAGTGCGCCATAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTG 137333 | || || ||||||||||| ||||| | |||| | ||||| | |||||||| Sbjct 2678 TTCAAGAGCTCCATAGTAAATTGTTTCAAAAATTTGTTGGTTCAACAATTGAGCTTCTTT 2619 Query 137334 GCTGTCGTAGGGCATATCCAATATAGCGAAAGCATCTGCAAGTCCTTGAATACCGATACC 137393 ||| || || || | | || ||| |||||||| | || |||||||| ||| ||||| Sbjct 2618 GCTTTCATAAGGAAAACGCATAATAATCAAAGCATCAGAAAATCCTTGAACACCAATACC 2559 Query 137394 GATAGGTCTGTGTTTAAAATTTGATATTTGAGC-GCTAACAAGCGGATAAAAGTTTGCGT 137452 |||||||| ||| ||||| ||| | | ||| || ||| |||||| | ||| | | Sbjct 2558 TATAGGTCTATGTCGCAAATTCGATTTCTTAGCTTCTGGCAA-TGGATAATAATTTACAT 2500 Query 137453 CTATAATTCTATTGAGATTGTTAGTAA 137479 | || ||| | || | ||| | |||| Sbjct 2499 CAATGATTTTGTTCAAATTTCTTGTAA 2473 >seq26001 Length=10617 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || |||||||| | || || ||| | || || | ||||| ||| | Sbjct 8562 ATGCAAATTTTCGTAAAAACCCTCACGGGTAAAACCATTACCCTAGAAGTAGAACCTTCG 8621 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||||||| | || ||| || ||| || |||||||| || || || |||||| Sbjct 8622 GATACTATCGAGAATGTTAAAGCCAAGATTCAAGACAAAGAGGGAATTCCTCCAGATCAG 8681 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | || ||||| ||||| ||||| | | | | | |||||||||| Sbjct 8682 CAAAGATTGATCTTCGCTGGCAAGCAACTTGAAGACGGCCGTACTCTTTCCGATTACAAT 8741 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || |||||||| || || ||||||||||| Sbjct 8742 ATCCAAAAAGAGTCTACTCTTCATTTAGTG 8771 >seq116385 Length=1425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 234/358 (65%), Gaps = 11/358 (3%) Strand=Plus/Minus Query 110332 GGCAAAATCAGTGTGTAATCCTTCATCTCTAGAAATGAGTTCGTTGCTGTATGTCAAACC 110391 |||||| ||| ||| | |||||| || ||||| || ||||| ||| | | |||||||| Sbjct 584 GGCAAAGTCACAGTGGAGTCCTTCGTCCCTAGAGATAAGTTCATTGGAGAAGGTCAAACC 525 Query 110392 GGGTAG--AGCCCCTTTTTTGTGTCTTTTATGTAGTAGATTGCGGCAAAACTTCCG--GA 110447 || | | ||||| || | | | || |||| ||||| ||||||||| || Sbjct 524 AGGCATCAAACCCCTCTTCT-------TCAACCAGAAGATCGCGGCGAAACTTCCGCTGA 472 Query 110448 AAAATACTCCTTCGACGATTGCAAAAGCGACCATGCGCTCGGCAAATGTAGCAGATTTAT 110507 | || | ||||| ||| |||||||| | || | ||||||||| || || |||||| Sbjct 471 AGAAAATGCCTTCAACGGCAGCAAAAGCAATGATTCTCTCGGCAAAGGTGGCGGATTTAC 412 Query 110508 TTTCTATCCACTTTTGAGCCCAAGCCGCCTTCCGTTTAACACTATCGATGTGCTCGATGG 110567 | | ||||| ||||| | |||||| || |||| | | | ||||| | Sbjct 411 TGCCAATCCAAGACAATGCCCAGTCAGCCTTCTTCTTCACACAAGGTAGATTCTCGACAG 352 Query 110568 CATTCAAAATCCTGTCACATTCTTGAGGATCTTTAATGTATTCGACCACGAGAATGTTGT 110627 | || || | ||| | ||| || ||||| ||||| | | | | ||| ||| Sbjct 351 CGTTGAAGAGGAAGTCTCTTTCCTGTGGATCGCGGATGTAAGAGTCGATTAAAATACTGT 292 Query 110628 ACATTTCCGTGTGAACGCACTCGATGAACGTCTGTTGCGCATAGAAAAAACTAGCCTC 110685 ||||||||| ||| ||| ||| || |||| | |||||||| | | ||| || Sbjct 291 ACATTTCCGAGTGGACGTTCTCCATAGCAATCTGGAACCCATAGAAACAGCGAGCTTC 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444419086085280