Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Megaselia_20abdita_20[genbank_20GCA_5F001015175.1_202015-05-29] 121,379 sequences; 412,270,594 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq63354 125 7e-24 seq30215 109 6e-19 seq26001 109 6e-19 seq93051 86.0 6e-12 >seq63354 Length=4016 Score = 125 bits (138), Expect = 7e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| |||||||| | ||| || ||||| |||||||| |||||||||||| Sbjct 2000 CCACCACGGAGACGCAACACCAAGTGAAGGGTGGACTCCTTTTGGATGTTGTAGTCGGAC 1941 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || | || || || || || |||||||| || ||||| || || Sbjct 1940 AAGGTGCGTCCGTCTTCCAATTGCTTTCCAGCGAAGATCAAACGTTGTTGATCTGGTGGG 1881 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || ||||| ||||| || || ||||| || | |||||||| | ||| || Sbjct 1880 ATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAAGGTTCGACT 1821 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTT 134720 || | |||||||| ||||| || | || || ||||| || |||||| || || Sbjct 1820 TCCAAGGTAATGGTCTTACCAGTAAGGGTCTTGACGAAGATCTGCATTCTGGTT 1767 >seq30215 Length=1837 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGTCGTCGAGCTG 134569 || || ||||| ||||||||||| ||||| || | ||| | | || ||| || | || Sbjct 1723 TGAAGAGTGGACTCCTTTTGAATATTGTAATCTGACAATG-TACGACCGTCTTCCAATTG 1665 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 || || || || ||||||||||| || || || || || |||||||| ||||||||||| Sbjct 1664 CTTTCCAGCGAAGATCAAACGCTGTTGGTCTGGAGGAATACCTTCTTTGTCTTGAATTTT 1605 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||||| || | || ||||| | || || || | ||||| || ||||| || Sbjct 1604 AGCCTTGACATTCTCGATGGTATCGGAAGGCTCAACCTCCAAGGTAATTGTCTTACCAGT 1545 Query 134690 TAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || |||||||| ||||| Sbjct 1544 CAAAGTCTTGACGAAAATCTGCAT 1521 >seq26001 Length=10617 Score = 109 bits (120), Expect = 6e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 134511 TGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGT 134570 || || || || || ||||| || ||||| ||| || || | ||| || || || Sbjct 8764 TGAAGAGTAGACTCTTTTTGGATATTGTAATCGGAAAGAGTACGGCCGTCTTCAAGTTGC 8705 Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 ||||| || || ||||| | |||||||| || || || || ||||| |||||||| || Sbjct 8704 TTGCCAGCGAAGATCAATCTTTGCTGATCTGGAGGAATTCCCTCTTTGTCTTGAATCTTG 8645 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | || || || | ||| || || || |||||||||||||| || Sbjct 8644 GCTTTAACATTCTCGATAGTATCCGAAGGTTCTACTTCTAGGGTAATGGTTTTACCCGTG 8585 Query 134691 AAAGTTTTAACGAAAATTTGCATTTTGT 134718 | ||||| ||||||||||||||| ||| Sbjct 8584 AGGGTTTTTACGAAAATTTGCATTCTGT 8557 >seq93051 Length=3786 Score = 86.0 bits (94), Expect = 6e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 8233 GCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGC 8292 ||||| ||||| | ||| ||||| |||| || |||||| | || ||||| ||||| Sbjct 2062 GCCATAATCGAGTCACAAGTTGAAACTGGTACCCCATACATGTTATATAAAGATGCTTGT 2121 Query 8293 AACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAA 8352 || ||||| |||||| ||||| || ||||| ||||||||||| ||| | ||| Sbjct 2122 AATAGGAAAAGTAATCAACAAAACGTAGGTACCATAAAATGCAGCAATCTTTGCACAGAA 2181 Query 8353 ATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTC 8402 || ||| | || || || || ||| | || || |||||| |||| || Sbjct 2182 ATAGTAGAATATTCAGCTCCGGATGAAATCGCAGTCTGCAATTTAGCATC 2231 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/227 (69%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 9094 GAGCTGTATAAAACCGTTTGGGAAA--TGAAGCAAAGCACGCTGATCGGCATGGCTGCGG 9151 ||||| || ||||| |||||||||| | | ||||||| || |||||||| | Sbjct 3087 GAGCTTTACAAAACTGTTTGGGAAATCTCTATCAAAGCA--TCAATTCAAATGGCTGCTG 3144 Query 9152 ATAGAGGCGCTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCAACTT 9211 || | || ||||| ||||| || ||||| || |||||| | ||||| | ||||| || Sbjct 3145 ATCGTGGTGCTTTCATTGACCAAAGTCAGTCATTTAACATTCATGTAGCGGAACCAAATT 3204 Query 9212 ACGCTTTGATGTCCAGCATTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATGT 9271 | | | | | || |||| || | |||||| | || | ||||| || |||| Sbjct 3205 ATGGAAAGCTCACATCAATGCATTTTTATGCATGGAAACTCGGGCTTAAAACTGGTATGT 3264 Query 9272 ACTATTTGCGCACAAAACCCGCCGCTGAACCTATCAAATTTACAGTT 9318 | |||||||| || || ||||| ||| | |||| | ||||| ||| Sbjct 3265 ATTATTTGCGTACTAAGCCCGCAGCTAATGCTATTCAGTTTACTGTT 3311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 504631590595080